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PDBsum entry 1vt2

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Top Page protein dna_rna metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 1vt2 calculated with MOLE 2.0 PDB id
1vt2
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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4 tunnels, coloured by tunnel radius 48 tunnels, coloured by tunnel radius 48 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.37 1.46 73.4 0.02 -0.52 2.8 87 0 0 0 5 0 1 0  A 1655 A C 1656 A C 2050 A A 2051 A G 2061 A A
2062 A A 2451 A C 2452 A G 2505 A U 2506 A C 2507
A C 2573 A G 2576 A A 2577 A G 2578 A C 2579 A G
2583 A U 2584 A U 2585 A A 2602 A C 2610 A C 2611
A C 2612 A U 2613 A MG 2968 A MG 2983 A
2 1.37 1.58 75.8 -0.06 -0.46 4.0 85 1 0 0 5 0 1 0  A 1655 A C 1656 A C 2050 A A 2051 A G 2061 A A
2062 A A 2451 A C 2452 A G 2505 A U 2506 A C 2507
A C 2512 A C 2573 A G 2576 A A 2577 A G 2578 A C
2579 A G 2583 A U 2584 A U 2585 A A 2602 A C 2610
A C 2611 A C 2612 A U 2613 A MG 2968 A MG 2983 A
3 1.38 1.55 88.8 -0.19 -0.64 3.6 86 0 1 0 5 0 1 0  U 744 A G 745 A U 746 A A 749 A U 755 A A 756 A G
757 A A 1269 A A 1272 A U 1273 A A 1618 A A 1655
A C 1656 A U 1657 A C 1658 A G 1659 A G 1660 A G
1661 A A 1678 A A 1679 A U 1680 A G 1681 A A 1755
A A 1759 A C 1761 A A 1762 A A 2003 A G 2004 A C
2050 A A 2051 A U 2613 A C 2712 A C 2715 A C 2716
A C 2717 A MG 2958 A MG 2968 A
4 1.47 1.51 91.2 -0.22 -0.58 4.3 84 1 1 0 5 0 1 0  U 744 A G 745 A U 746 A A 749 A U 755 A A 756 A G
757 A A 1269 A A 1272 A U 1273 A A 1618 A A 1655
A C 1656 A U 1657 A C 1658 A G 1659 A G 1660 A G
1661 A A 1678 A A 1679 A U 1680 A G 1681 A A 1755
A A 1759 A C 1761 A A 1762 A A 2003 A G 2004 A C
2050 A A 2051 A C 2512 A U 2613 A C 2712 A C 2715
A C 2716 A C 2717 A MG 2958 A MG 2968 A
5 1.45 1.48 94.1 -0.41 -0.56 6.1 80 3 0 0 5 1 1 0  G 745 A U 746 A A 749 A A 1269 A C 1270 A G 1271
A U 1273 A A 1276 A G 1277 A C 1278 A G 1279 A G
1280 A G 1281 A U 1282 A G 1283 A A 1285 A A 1287
A G 1288 A A 1618 A G 1649 A A 1650 A A 1655 A C
1656 A U 1657 A A 2003 A G 2004 A C 2050 A A 2051
A U 2613 A MG 2968 A MG 3036 A
6 1.44 1.49 96.2 -0.79 -0.43 13.2 87 6 0 1 7 0 1 0  A 460 A C 461 A C 462 A A 470 A A 471 A A 751 A U
1258 A G 1259 A A 1655 A C 1656 A C 2050 A A 2051
A A 2058 A A 2059 A A 2062 A G 2505 A G 2576 A A
2577 A G 2578 A C 2579 A U 2609 A C 2610 A C 2611
A C 2612 A U 2613 A MG 2968 A MG 2983 A
7 1.36 1.45 96.5 -0.41 -0.50 6.7 80 4 0 0 5 1 1 0  G 745 A U 746 A A 749 A A 1269 A C 1270 A G 1271
A U 1273 A A 1276 A G 1277 A C 1278 A G 1279 A G
1280 A G 1281 A U 1282 A G 1283 A A 1285 A A 1287
A G 1288 A A 1618 A G 1649 A A 1650 A A 1655 A C
1656 A U 1657 A A 2003 A G 2004 A C 2050 A A 2051
A C 2512 A U 2613 A MG 2968 A MG 3036 A
8 1.36 1.46 98.9 -0.40 -0.64 5.8 88 3 1 0 6 0 1 0  A 13 A A 14 A U 521 A U 1267 A A 1268 A A 1655 A
C 1656 A U 1657 A G 2004 A A 2005 A C 2006 A U
2007 A C 2008 A C 2047 A G 2048 A G 2049 A C 2050
A A 2051 A U 2613 A A 2614 A G 2624 A G 2625 A G
2803 A C 2824 A G 2825 A C 2889 A G 2890 A MG
2944 A MG 2968 A MG 3021 A
9 1.39 1.46 98.7 -0.75 -0.40 12.9 87 7 0 1 7 0 1 0  A 460 A C 461 A C 462 A A 470 A A 471 A A 751 A U
1258 A G 1259 A A 1655 A C 1656 A C 2050 A A 2051
A A 2058 A A 2059 A A 2062 A G 2505 A C 2512 A G
2576 A A 2577 A G 2578 A C 2579 A U 2609 A C 2610
A C 2611 A C 2612 A U 2613 A MG 2968 A MG 2983 A
10 1.37 1.46 100.2 -0.04 -0.41 4.6 85 1 1 1 8 2 1 0  U 1267 A A 1268 A A 1285 A A 1286 A A 1655 A C
1656 A U 1657 A G 2004 A A 2005 A C 2006 A U 2007
A C 2008 A C 2047 A G 2048 A G 2049 A C 2050 A A
2051 A U 2613 A A 2614 A C 2815 A G 2816 A C 2824
A G 2825 A MG 2944 A MG 2968 A MG 3021 A
11 1.43 1.52 101.3 -0.38 -0.57 6.1 87 4 1 0 6 0 1 0  A 13 A A 14 A U 521 A U 1267 A A 1268 A A 1655 A
C 1656 A U 1657 A G 2004 A A 2005 A C 2006 A U
2007 A C 2008 A C 2047 A G 2048 A G 2049 A C 2050
A A 2051 A C 2512 A U 2613 A A 2614 A G 2624 A G
2625 A G 2803 A C 2824 A G 2825 A C 2889 A G 2890
A MG 2944 A MG 2968 A MG 3021 A
12 1.43 1.61 102.6 -0.08 -0.39 5.1 85 2 1 1 8 2 1 0  U 1267 A A 1268 A A 1285 A A 1286 A A 1655 A C
1656 A U 1657 A G 2004 A A 2005 A C 2006 A U 2007
A C 2008 A C 2047 A G 2048 A G 2049 A C 2050 A A
2051 A C 2512 A U 2613 A A 2614 A C 2815 A G 2816
A C 2824 A G 2825 A MG 2944 A MG 2968 A MG 3021 A
13 1.44 1.49 105.9 -0.17 -0.64 3.1 87 0 0 0 5 0 1 0  U 744 A G 745 A U 746 A A 749 A U 755 A A 1269 A
A 1272 A U 1273 A A 1274 A C 1289 A C 1290 A C
1291 A G 1292 A C 1293 A U 1294 A A 1302 A G 1332
A A 1608 A A 1609 A A 1618 A G 1619 A A 1641 A G
1642 A G 1643 A C 1644 A G 1645 A C 1646 A A 1655
A C 1656 A U 1657 A C 1658 A G 1659 A A 2003 A G
2004 A C 2050 A A 2051 A U 2613 A MG 2968 A
14 1.38 1.45 105.1 -0.42 -0.63 5.7 86 2 0 0 5 0 1 0  A 1655 A C 1656 A U 1657 A G 2004 A A 2005 A A
2042 A C 2043 A C 2044 A C 2045 A G 2046 A C 2047
A G 2048 A G 2049 A C 2050 A A 2051 A U 2613 A A
2614 A U 2615 A C 2616 A U 2617 A G 2618 A C 2619
A G 2621 A U 2622 A G 2623 A G 2624 A A 2634 A A
2635 A C 2636 A U 2637 A G 2638 A G 2770 A C 2771
A C 2772 A C 2773 A G 2775 A A 2776 A G 2777 A C
2827 A MG 2968 A MG 3002 A
15 1.39 1.46 108.3 -0.20 -0.56 4.0 85 1 0 0 5 0 1 0  U 744 A G 745 A U 746 A A 749 A U 755 A A 1269 A
A 1272 A U 1273 A A 1274 A C 1289 A C 1290 A C
1291 A G 1292 A C 1293 A U 1294 A A 1302 A G 1332
A A 1608 A A 1609 A A 1618 A G 1619 A A 1641 A G
1642 A G 1643 A C 1644 A G 1645 A C 1646 A A 1655
A C 1656 A U 1657 A C 1658 A G 1659 A A 2003 A G
2004 A C 2050 A A 2051 A C 2512 A U 2613 A MG
2968 A
16 1.34 1.44 107.5 -0.40 -0.56 6.0 85 3 0 0 5 0 1 0  A 1655 A C 1656 A U 1657 A G 2004 A A 2005 A A
2042 A C 2043 A C 2044 A C 2045 A G 2046 A C 2047
A G 2048 A G 2049 A C 2050 A A 2051 A C 2512 A U
2613 A A 2614 A U 2615 A C 2616 A U 2617 A G 2618
A C 2619 A G 2621 A U 2622 A G 2623 A G 2624 A A
2634 A A 2635 A C 2636 A U 2637 A G 2638 A G 2770
A C 2771 A C 2772 A C 2773 A G 2775 A A 2776 A G
2777 A C 2827 A MG 3002 A
17 1.46 1.63 109.2 -0.21 -0.65 3.1 87 0 0 0 5 0 1 0  U 3 A U 4 A A 1655 A C 1656 A U 1657 A G 2004 A A
2005 A A 2042 A C 2043 A C 2044 A C 2045 A G 2046
A C 2047 A G 2048 A G 2049 A C 2050 A A 2051 A U
2613 A A 2614 A U 2615 A C 2616 A U 2617 A G 2618
A C 2619 A G 2621 A U 2622 A G 2623 A G 2624 A G
2627 A C 2628 A U 2629 A G 2630 A G 2631 A A 2632
A G 2633 A A 2634 A A 2635 A C 2636 A G 2775 A A
2776 A G 2777 A U 2783 A U 2786 A C 2787 A C 2788
A C 2827 A A 2893 A MG 3002 A
18 1.43 1.61 110.5 -0.35 -0.67 3.0 94 0 0 4 5 0 1 0  U 744 A G 745 A U 746 A A 749 A U 755 A A 756 A A
1269 A A 1272 A U 1273 A A 1274 A A 1618 A A 1655
A C 1656 A U 1657 A C 1658 A G 1659 A U 1709 A A
2003 A G 2004 A C 2050 A A 2051 A U 2613 A U 2690
A U 2695 A U 2696 A G 2697 A U 2698 A C 2704 A A
2705 A U 2707 A G 2708 A G 2709 A C 2710 A A 2711
A C 2712 A U 2713 A G 2714 A C 2715 A MG 2968 A
MG 3003 A
19 1.49 1.54 113.3 -0.34 -0.60 4.0 88 0 1 1 5 0 1 0  A 1655 A C 1656 A G 1839 A G 1903 A G 1904 A U
1971 A C 2050 A A 2051 A A 2062 A A 2439 A G 2505
A G 2576 A A 2577 A G 2578 A C 2579 A U 2584 A U
2585 A U 2586 A A 2589 A A 2590 A C 2591 A G 2592
A U 2593 A C 2594 A G 2595 A U 2596 A G 2597 A C
2601 A U 2604 A U 2605 A G 2607 A G 2608 A U 2609
A C 2610 A C 2611 A C 2612 A U 2613 A MG 2968 A
MG 2983 A MG 3032 A MG 3033 A
20 1.47 1.64 112.9 -0.41 -0.62 3.8 92 1 0 4 5 0 1 0  U 744 A G 745 A U 746 A A 749 A U 755 A A 756 A A
1269 A A 1272 A U 1273 A A 1274 A A 1618 A A 1655
A C 1656 A U 1657 A C 1658 A G 1659 A U 1709 A A
2003 A G 2004 A C 2050 A A 2051 A C 2512 A U 2613
A U 2690 A U 2695 A U 2696 A G 2697 A U 2698 A C
2704 A A 2705 A U 2707 A G 2708 A G 2709 A C 2710
A A 2711 A C 2712 A U 2713 A G 2714 A C 2715 A MG
2968 A MG 3003 A
21 1.51 1.66 111.5 -0.20 -0.55 4.0 85 1 0 0 5 0 1 0  U 3 A U 4 A A 1655 A C 1656 A U 1657 A G 2004 A A
2005 A A 2042 A C 2043 A C 2044 A C 2045 A G 2046
A C 2047 A G 2048 A G 2049 A C 2050 A A 2051 A C
2512 A U 2613 A A 2614 A U 2615 A C 2616 A U 2617
A G 2618 A C 2619 A G 2621 A U 2622 A G 2623 A G
2624 A G 2627 A C 2628 A U 2629 A G 2630 A G 2631
A A 2632 A G 2633 A A 2634 A A 2635 A C 2636 A G
2775 A A 2776 A G 2777 A U 2783 A U 2786 A C 2787
A C 2788 A C 2827 A A 2893 A MG 3002 A
22 1.51 1.56 115.7 -0.35 -0.53 5.1 86 1 1 1 5 0 1 0  A 1655 A C 1656 A G 1839 A G 1903 A G 1904 A U
1971 A C 2050 A A 2051 A A 2062 A A 2439 A G 2505
A C 2512 A G 2576 A A 2577 A G 2578 A C 2579 A U
2584 A U 2585 A U 2586 A A 2589 A A 2590 A C 2591
A G 2592 A U 2593 A C 2594 A G 2595 A U 2596 A G
2597 A C 2601 A U 2604 A U 2605 A G 2607 A G 2608
A U 2609 A C 2610 A C 2611 A C 2612 A U 2613 A MG
2968 A MG 2983 A MG 3032 A MG 3033 A
23 1.35 1.41 115.1 -0.53 -0.65 7.0 83 3 1 0 6 1 1 0  A 1655 A C 1656 A U 1657 A G 2004 A A 2005 A A
2042 A C 2043 A C 2044 A C 2045 A G 2046 A C 2047
A G 2048 A G 2049 A C 2050 A A 2051 A U 2613 A A
2614 A U 2615 A C 2616 A U 2617 A G 2618 A C 2619
A G 2621 A U 2622 A G 2623 A G 2624 A A 2634 A A
2635 A G 2775 A A 2776 A G 2777 A C 2827 A G 2828
A A 2829 A A 2835 A U 2836 A G 2877 A MG 2968 A
MG 3002 A
24 1.40 1.48 116.4 -0.22 -0.67 3.1 87 0 0 0 5 0 1 0  U 744 A G 745 A U 746 A A 749 A U 755 A A 756 A G
757 A A 1269 A A 1272 A U 1273 A A 1618 A A 1655
A C 1656 A U 1657 A C 1658 A G 1659 A G 1660 A G
1661 A C 1675 A A 1676 A A 1677 A A 1678 A A 1679
A A 1690 A C 1691 A C 1764 A U 1765 A G 1766 A G
1767 A C 1768 A U 1769 A A 1977 A A 1978 A U 1979
A G 1980 A A 1981 A U 1982 A A 2003 A G 2004 A C
2050 A A 2051 A U 2613 A C 2712 A MG 2958 A MG
2968 A MG 3026 A
25 1.50 1.64 116.9 -0.33 -0.64 4.5 87 1 0 0 5 0 1 0  A 1655 A C 1656 A U 1657 A G 2004 A A 2005 A A
2042 A C 2043 A C 2044 A C 2045 A G 2046 A C 2047
A G 2048 A G 2049 A C 2050 A A 2051 A U 2613 A A
2614 A U 2615 A C 2616 A U 2617 A G 2618 A C 2619
A G 2621 A U 2622 A G 2623 A G 2624 A G 2627 A G
2633 A A 2634 A G 2775 A A 2776 A G 2777 A A 2809
A A 2810 A G 2811 A G 2812 A A 2813 A C 2827 A G
2828 A A 2829 A A 2886 A MG 3002 A
26 1.43 1.49 118.0 -0.21 -0.66 3.1 87 0 0 0 5 0 1 0  G 701 A A 735 A C 736 A U 744 A G 745 A U 746 A A
749 A U 755 A A 756 A A 1269 A A 1272 A U 1273 A
A 1274 A G 1299 A G 1300 A A 1301 A A 1302 A G
1435 A A 1552 A A 1553 A U 1554 A C 1607 A A 1618
A G 1623 A U 1624 A C 1625 A A 1626 A G 1627 A G
1633 A A 1634 A U 1636 A A 1637 A A 1655 A C 1656
A U 1657 A C 1658 A G 1659 A A 2003 A G 2004 A C
2050 A A 2051 A U 2613 A C 2712 A MG 2968 A
27 1.43 1.60 118.8 -0.22 -0.60 3.8 85 1 0 0 5 0 1 0  U 744 A G 745 A U 746 A A 749 A U 755 A A 756 A G
757 A A 1269 A A 1272 A U 1273 A A 1618 A A 1655
A C 1656 A U 1657 A C 1658 A G 1659 A G 1660 A G
1661 A C 1675 A A 1676 A A 1677 A A 1678 A A 1679
A A 1690 A C 1691 A C 1764 A U 1765 A G 1766 A G
1767 A C 1768 A U 1769 A A 1977 A A 1978 A U 1979
A G 1980 A A 1981 A U 1982 A A 2003 A G 2004 A C
2050 A A 2051 A C 2512 A U 2613 A C 2712 A MG
2958 A MG 2968 A MG 3026 A
28 1.34 1.44 117.5 -0.53 -0.58 7.4 82 4 1 0 6 1 1 0  A 1655 A C 1656 A U 1657 A G 2004 A A 2005 A A
2042 A C 2043 A C 2044 A C 2045 A G 2046 A C 2047
A G 2048 A G 2049 A C 2050 A A 2051 A C 2512 A U
2613 A A 2614 A U 2615 A C 2616 A U 2617 A G 2618
A C 2619 A G 2621 A U 2622 A G 2623 A G 2624 A A
2634 A A 2635 A G 2775 A A 2776 A G 2777 A C 2827
A G 2828 A A 2829 A A 2835 A U 2836 A G 2877 A MG
2968 A MG 3002 A
29 1.43 1.51 120.4 -0.22 -0.61 3.7 85 1 0 0 5 0 1 0  G 701 A A 735 A C 736 A U 744 A G 745 A U 746 A A
749 A U 755 A A 756 A A 1269 A A 1272 A U 1273 A
A 1274 A G 1299 A G 1300 A A 1301 A A 1302 A G
1435 A A 1552 A A 1553 A U 1554 A C 1607 A A 1618
A G 1623 A U 1624 A C 1625 A A 1626 A G 1627 A G
1633 A A 1634 A U 1636 A A 1637 A A 1655 A C 1656
A U 1657 A C 1658 A G 1659 A A 2003 A G 2004 A C
2050 A A 2051 A C 2512 A U 2613 A C 2712 A MG
2968 A
30 1.36 1.42 119.6 -0.24 -0.68 3.1 87 0 0 0 5 0 1 0  A 10 A C 11 A A 1655 A C 1656 A U 1657 A G 2004 A
A 2005 A A 2042 A C 2043 A C 2044 A C 2045 A G
2046 A C 2047 A G 2048 A G 2049 A C 2050 A A 2051
A U 2613 A A 2614 A U 2615 A C 2616 A U 2617 A G
2618 A C 2619 A G 2621 A U 2622 A G 2623 A G 2624
A G 2625 A C 2626 A G 2627 A G 2630 A G 2631 A A
2632 A G 2633 A G 2775 A A 2776 A G 2777 A G 2801
A G 2802 A G 2812 A C 2827 A C 2889 A G 2890 A U
2891 A G 2892 A A 2893 A G 2894 A MG 3002 A
31 1.48 1.51 119.3 -0.32 -0.59 4.8 85 2 0 0 5 0 1 0  A 1655 A C 1656 A U 1657 A G 2004 A A 2005 A A
2042 A C 2043 A C 2044 A C 2045 A G 2046 A C 2047
A G 2048 A G 2049 A C 2050 A A 2051 A C 2512 A U
2613 A A 2614 A U 2615 A C 2616 A U 2617 A G 2618
A C 2619 A G 2621 A U 2622 A G 2623 A G 2624 A G
2627 A G 2633 A A 2634 A G 2775 A A 2776 A G 2777
A A 2809 A A 2810 A G 2811 A G 2812 A A 2813 A C
2827 A G 2828 A A 2829 A A 2886 A MG 2968 A MG
3002 A
32 1.40 1.46 121.8 -0.63 -0.65 5.6 90 2 0 4 6 0 2 0  U 744 A G 745 A U 746 A A 749 A U 755 A A 756 A A
1269 A A 1272 A U 1273 A A 1274 A A 1618 A A 1655
A C 1656 A U 1657 A C 1658 A G 1659 A A 2003 A G
2004 A C 2050 A A 2051 A U 2613 A U 2690 A C 2691
A G 2692 A G 2708 A G 2709 A A 2711 A C 2712 A U
2713 A G 2714 A C 2840 A C 2841 A G 2842 A G 2843
A G 2869 A C 2870 A U 2871 A A 2872 A MG 2968 A
33 1.34 1.45 122.0 -0.23 -0.60 3.9 85 1 0 0 5 0 1 0  A 10 A C 11 A A 1655 A C 1656 A U 1657 A G 2004 A
A 2005 A A 2042 A C 2043 A C 2044 A C 2045 A G
2046 A C 2047 A G 2048 A G 2049 A C 2050 A A 2051
A C 2512 A U 2613 A A 2614 A U 2615 A C 2616 A U
2617 A G 2618 A C 2619 A G 2621 A U 2622 A G 2623
A G 2624 A G 2625 A C 2626 A G 2627 A G 2630 A G
2631 A A 2632 A G 2633 A G 2775 A A 2776 A G 2777
A G 2801 A G 2802 A G 2812 A C 2827 A C 2889 A G
2890 A U 2891 A G 2892 A A 2893 A G 2894 A MG
3002 A
34 1.39 1.48 124.2 -0.62 -0.60 6.0 89 3 0 4 6 0 2 0  U 744 A G 745 A U 746 A A 749 A U 755 A A 756 A A
1269 A A 1272 A U 1273 A A 1274 A A 1618 A A 1655
A C 1656 A U 1657 A C 1658 A G 1659 A A 2003 A G
2004 A C 2050 A A 2051 A C 2512 A U 2613 A U 2690
A C 2691 A G 2692 A G 2708 A G 2709 A A 2711 A C
2712 A U 2713 A G 2714 A C 2840 A C 2841 A G 2842
A G 2843 A G 2869 A C 2870 A U 2871 A A 2872 A MG
2968 A
35 1.36 1.42 125.2 -0.40 -0.64 6.0 83 1 1 0 6 1 1 0  U 525 A A 528 A A 529 A G 533 A U 534 A G 535 A G
536 A C 550 A G 551 A U 552 A G 553 A U 554 A G
555 A A 556 A C 557 A C 995 A A 1655 A C 1656 A U
1657 A G 2004 A A 2005 A C 2021 A U 2022 A C 2023
A C 2044 A C 2045 A G 2046 A C 2047 A G 2048 A G
2049 A C 2050 A A 2051 A U 2613 A A 2614 A U 2615
A C 2616 A U 2617 A G 2618 A C 2619 A MG 2914 A
MG 3002 A
36 1.34 1.45 127.6 -0.42 -0.59 6.7 82 3 1 0 6 1 1 0  U 525 A A 528 A A 529 A G 533 A U 534 A G 535 A G
536 A C 550 A G 551 A U 552 A G 553 A U 554 A G
555 A A 556 A C 557 A C 995 A A 1655 A C 1656 A U
1657 A G 2004 A A 2005 A C 2021 A U 2022 A C 2023
A C 2044 A C 2045 A G 2046 A C 2047 A G 2048 A G
2049 A C 2050 A A 2051 A C 2512 A U 2613 A A 2614
A U 2615 A C 2616 A U 2617 A G 2618 A C 2619 A MG
2914 A MG 3002 A
37 1.55 1.55 131.6 -0.56 -0.57 7.6 83 5 1 1 8 1 1 0  A 1655 A C 1656 A U 1657 A G 2004 A A 2005 A A
2042 A C 2043 A C 2044 A C 2045 A G 2046 A C 2047
A G 2048 A G 2049 A C 2050 A A 2051 A U 2613 A A
2614 A U 2615 A C 2616 A U 2617 A G 2618 A C 2619
A G 2621 A U 2622 A G 2641 A G 2642 A U 2672 A G
2673 A G 2674 A C 2676 A G 2677 A C 2678 A A 2679
A A 2725 A A 2726 A A 2727 A U 2728 A G 2729 A C
2730 A C 2773 A C 2774 A G 2777 A MG 2968 A MG
3002 A
38 1.49 1.74 134.0 -0.54 -0.52 7.9 83 6 1 1 8 1 1 0  A 1655 A C 1656 A U 1657 A G 2004 A A 2005 A A
2042 A C 2043 A C 2044 A C 2045 A G 2046 A C 2047
A G 2048 A G 2049 A C 2050 A A 2051 A C 2512 A U
2613 A A 2614 A U 2615 A C 2616 A U 2617 A G 2618
A C 2619 A G 2621 A U 2622 A G 2641 A G 2642 A U
2672 A G 2673 A G 2674 A C 2676 A G 2677 A C 2678
A A 2679 A A 2725 A A 2726 A A 2727 A U 2728 A G
2729 A C 2730 A C 2773 A C 2774 A G 2777 A MG
3002 A
39 1.43 1.46 151.2 -0.27 -0.71 3.2 87 0 0 0 5 0 1 0  U 744 A G 745 A U 746 A A 749 A U 755 A A 1269 A
A 1272 A U 1273 A A 1274 A A 1302 A G 1303 A A
1304 A C 1305 A C 1315 A A 1384 A C 1386 A A 1387
A G 1388 A G 1389 A U 1391 A A 1393 A U 1394 A U
1405 A U 1440 A G 1471 A C 1472 A G 1473 A G 1475
A U 1513 A G 1514 A A 1515 A C 1556 A C 1557 A C
1605 A C 1606 A A 1608 A A 1609 A A 1618 A G 1619
A U 1624 A C 1625 A A 1641 A G 1642 A G 1643 A C
1644 A C 1646 A A 1655 A C 1656 A U 1657 A C 1658
A G 1659 A A 2003 A G 2004 A C 2050 A A 2051 A U
2613 A MG 2951 A MG 2968 A
40 1.37 1.45 153.6 -0.28 -0.67 3.7 85 1 0 0 5 0 1 0  U 744 A G 745 A U 746 A A 749 A U 755 A A 1269 A
A 1272 A U 1273 A A 1274 A A 1302 A G 1303 A A
1304 A C 1305 A C 1315 A A 1384 A C 1386 A A 1387
A G 1388 A G 1389 A U 1391 A A 1393 A U 1394 A U
1405 A U 1440 A G 1471 A C 1472 A G 1473 A G 1475
A U 1513 A G 1514 A A 1515 A C 1556 A C 1557 A C
1605 A C 1606 A A 1608 A A 1609 A A 1618 A G 1619
A U 1624 A C 1625 A A 1641 A G 1642 A G 1643 A C
1644 A C 1646 A A 1655 A C 1656 A U 1657 A C 1658
A G 1659 A A 2003 A G 2004 A C 2050 A A 2051 A C
2512 A U 2613 A MG 2951 A MG 2968 A
41 1.49 1.49 155.6 -0.44 -0.56 7.3 82 3 1 0 6 1 1 0  A 676 A A 677 A C 679 A C 680 A G 681 A G 682 A G
775 A G 776 A G 777 A U 790 A C 791 A A 794 A C
795 A C 796 A G 797 A G 798 A A 1655 A C 1656 A C
1804 A A 1805 A C 1806 A G 1807 A A 1808 A G 1845
A G 1846 A A 1847 A C 2050 A A 2051 A A 2059 A A
2062 A A 2082 A G 2083 A C 2084 A U 2085 A U 2086
A G 2087 A G 2239 A U 2240 A C 2442 A G 2505 A G
2576 A A 2577 A G 2578 A C 2579 A U 2609 A C 2610
A C 2611 A C 2612 A U 2613 A MG 2930 A MG 2968 A
MG 2983 A
42 1.40 1.45 158.0 -0.42 -0.52 7.4 81 4 1 0 6 1 1 0  A 676 A A 677 A C 679 A C 680 A G 681 A G 682 A G
775 A G 776 A G 777 A U 790 A C 791 A A 794 A C
795 A C 796 A G 797 A G 798 A A 1655 A C 1656 A C
1804 A A 1805 A C 1806 A G 1807 A A 1808 A G 1845
A G 1846 A A 1847 A C 2050 A A 2051 A A 2059 A A
2062 A A 2082 A G 2083 A C 2084 A U 2085 A U 2086
A G 2087 A G 2239 A U 2240 A C 2442 A G 2505 A C
2512 A G 2576 A A 2577 A G 2578 A C 2579 A U 2609
A C 2610 A C 2611 A C 2612 A U 2613 A MG 2930 A
MG 2968 A MG 2983 A
43 1.52 1.73 157.7 -0.57 -0.63 7.2 88 3 0 1 5 0 1 0  A 676 A A 677 A C 679 A C 680 A G 681 A G 682 A G
775 A G 776 A G 777 A U 790 A C 791 A A 794 A C
795 A C 796 A G 797 A G 798 A A 1655 A C 1656 A A
1808 A C 2050 A A 2051 A A 2059 A A 2062 A C 2078
A U 2079 A A 2080 A U 2081 A A 2082 A G 2083 A U
2231 A C 2232 A U 2233 A G 2234 A G 2235 A U 2236
A G 2237 A U 2240 A C 2442 A G 2505 A G 2576 A A
2577 A G 2578 A C 2579 A U 2609 A C 2610 A C 2611
A C 2612 A U 2613 A MG 2930 A MG 2968 A MG 2983 A
44 1.44 1.45 160.1 -0.61 -0.59 7.8 87 4 0 1 5 0 1 0  A 676 A A 677 A C 679 A C 680 A G 681 A G 682 A G
775 A G 776 A G 777 A U 790 A C 791 A A 794 A C
795 A C 796 A G 797 A G 798 A A 1655 A C 1656 A A
1808 A C 2050 A A 2051 A A 2059 A A 2062 A C 2078
A U 2079 A A 2080 A U 2081 A A 2082 A G 2083 A U
2231 A C 2232 A U 2233 A G 2234 A G 2235 A U 2236
A G 2237 A U 2240 A C 2442 A G 2505 A C 2512 A G
2576 A A 2577 A G 2578 A C 2579 A U 2609 A C 2610
A C 2611 A C 2612 A U 2613 A MG 2930 A MG 2968 A
MG 2983 A
45 1.31 1.51 19.3 1.98 0.39 3.6 89 0 2 0 7 1 0 0  
46 1.35 1.53 23.8 0.65 -0.01 9.7 91 1 1 0 5 1 0 0  
47 1.36 1.53 30.9 1.41 0.04 1.8 91 0 0 1 8 1 0 0  
48 1.21 1.21 16.3 -1.46 -0.60 16.6 93 2 0 1 3 0 0 0  C 2785 A U 2786 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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