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PDBsum entry 1vrn
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Pore analysis for: 1vrn calculated with  MOLE 2.0
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PDB id
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1vrn
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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0 pores,
coloured by radius |
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13 pores,
coloured by radius
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13 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.33 |
2.19 |
34.2 |
1.07 |
0.47 |
7.1 |
73 |
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2 |
0 |
1 |
9 |
3 |
2 |
2 |
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HEC 401 C HEC 402 C
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2 |
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2.09 |
2.24 |
36.8 |
1.25 |
0.52 |
7.1 |
77 |
1 |
0 |
1 |
10 |
4 |
0 |
1 |
BCB 401 M BCB 403 M BPB 405 M NS5 600 M
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3 |
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1.41 |
3.35 |
50.1 |
1.10 |
0.49 |
9.1 |
79 |
5 |
0 |
1 |
14 |
1 |
1 |
5 |
HEC 401 C HEC 402 C HEC 404 C
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4 |
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1.25 |
1.91 |
54.5 |
0.30 |
0.27 |
9.9 |
74 |
4 |
0 |
2 |
11 |
3 |
4 |
2 |
HEC 402 C HEC 404 C
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5 |
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1.51 |
1.87 |
72.4 |
0.47 |
0.38 |
11.1 |
81 |
8 |
2 |
4 |
12 |
7 |
0 |
1 |
HEC 403 C HEC 404 C BCB 402 L BCB 401 M BCB 403 M
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6 |
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1.59 |
1.72 |
73.6 |
-0.74 |
0.00 |
17.0 |
80 |
10 |
0 |
3 |
12 |
2 |
1 |
1 |
HEC 403 C HEC 404 C
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7 |
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1.56 |
1.72 |
74.5 |
0.43 |
0.41 |
12.4 |
84 |
9 |
2 |
5 |
13 |
6 |
0 |
1 |
HEC 403 C HEC 404 C BCB 402 L BCB 401 M BCB 403 M
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8 |
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1.95 |
4.04 |
76.8 |
0.21 |
0.71 |
13.6 |
72 |
8 |
1 |
2 |
7 |
8 |
1 |
0 |
BCB 402 L BCB 404 L LDA 702 L LDA 706 L BCB 401 M
BCB 403 M
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9 |
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1.43 |
1.85 |
80.3 |
-0.92 |
-0.03 |
18.1 |
85 |
10 |
1 |
7 |
9 |
4 |
1 |
0 |
HEC 403 C BCB 402 L BCB 401 M BCB 403 M
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10 |
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1.57 |
1.82 |
98.1 |
-0.28 |
0.10 |
14.2 |
81 |
9 |
1 |
6 |
11 |
7 |
1 |
1 |
HEC 403 C BCB 402 L BCB 401 M BCB 403 M BPB 405 M
NS5 600 M
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11 |
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1.54 |
2.99 |
103.5 |
0.89 |
0.53 |
10.5 |
81 |
10 |
1 |
4 |
25 |
5 |
1 |
6 |
HEC 401 C HEC 402 C HEC 403 C HEC 404 C BCB 402 L
BCB 401 M BCB 403 M
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12 |
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1.73 |
1.99 |
123.3 |
0.12 |
0.46 |
14.2 |
71 |
9 |
3 |
1 |
18 |
13 |
3 |
0 |
LDA 701 H SO4 802 H BCB 402 L BCB 404 L BPB 406 L
LDA 706 L BCB 401 M BCB 403 M BPB 405 M MQ9 501 M
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13 |
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1.74 |
1.97 |
137.2 |
-0.38 |
0.25 |
13.3 |
70 |
8 |
4 |
2 |
11 |
9 |
4 |
0 |
LDA 701 H SO4 802 H BCB 402 L BCB 404 L BPB 406 L
LDA 702 L LDA 706 L MQ9 501 M
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program