PDBsum entry 1vqz Go to PDB code:  Tunnel analysis for: 1vqz calculated with MOLE 2.0 PDB id 1vqz Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.15 1.86 32.9 -0.96 -0.09 21.8 87 3 2 3 6 2 0 1  MSE 144 A EDO 409 A EDO 410 A EDO 414 A 2 1.41 1.73 18.2 -0.12 0.20 5.6 55 1 0 0 1 4 1 0  MSE 205 A MSE 212 A 3 1.20 1.87 18.9 0.02 0.22 5.2 60 1 0 0 2 4 1 0  MSE 205 A MSE 212 A 4 1.43 1.74 19.4 0.29 0.48 2.5 58 0 1 1 1 5 1 0  MSE 1 A MSE 205 A MSE 212 A 5 1.42 1.74 20.0 -0.14 0.08 5.1 63 1 1 0 1 4 1 0  MSE 1 A MSE 205 A MSE 212 A 6 1.20 1.88 20.1 0.37 0.46 2.4 62 0 1 1 2 5 1 0  MSE 1 A MSE 205 A MSE 212 A 7 1.20 1.87 20.7 -0.07 0.08 4.8 66 1 1 0 2 4 1 0  MSE 1 A MSE 205 A MSE 212 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.