PDBsum entry 1vqq Go to PDB code:  Pore analysis for: 1vqq calculated with MOLE 2.0 PDB id 1vqq Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   13 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.03 3.05 34.3 -1.61 -0.37 14.3 86 4 2 4 1 2 0 0   2 1.43 1.93 38.1 -2.08 -0.61 29.7 85 4 4 1 3 0 0 0   3 1.78 1.77 48.0 -1.98 -0.23 16.5 71 3 4 3 0 5 2 0   4 1.99 4.21 52.3 -2.21 -0.57 31.4 84 6 7 4 3 0 1 0   5 1.49 2.04 54.9 -2.13 -0.60 30.4 84 4 6 4 3 0 2 0   6 1.44 1.93 56.2 -1.85 -0.45 27.7 80 6 7 0 3 1 0 0   7 1.58 1.82 56.2 -2.75 -0.69 23.1 88 6 2 7 0 0 1 0   8 2.17 4.47 60.4 -1.75 -0.31 27.6 82 6 7 3 5 1 1 0   9 1.96 1.96 69.8 -2.26 -0.57 28.9 83 6 9 2 1 1 0 0   10 1.97 1.97 72.4 -2.45 -0.79 24.6 86 8 7 5 0 0 0 0   11 1.57 2.28 79.8 -2.33 -0.78 32.5 83 6 13 2 1 0 0 0   12 1.79 1.77 81.0 -1.70 -0.53 26.8 82 9 9 2 5 0 0 0   13 1.75 1.73 84.2 -1.82 -0.54 24.7 84 6 8 2 2 1 0 0   14 1.75 1.73 86.8 -2.01 -0.70 22.1 87 8 6 5 1 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.