PDBsum entry 1vqk Go to PDB code:  Tunnel analysis for: 1vqk calculated with MOLE 2.0 PDB id 1vqk Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.19 1.22 294.7 -0.44 -0.61 6.5 86 5 2 4 7 1 1 0  C 725 0 C 726 0 G 727 0 C 728 0 C 729 0 G 730 0 U 731 0 U 734 0 A 737 0 G 738 0 G 739 0 G 740 0 C 741 0 G 743 0 A 913 0 A 914 0 C 915 0 G 928 0 A 929 0 C 930 0 C 931 0 U 932 0 A 943 0 C 1033 0 G 1034 0 C 1035 0 G 1036 0 G 1037 0 G 1046 0 U 1047 0 G 1048 0 C 1049 0 C 1051 0 A 1058 0 G 1059 0 C 1060 0 C 1061 0 U 1062 0 G 1063 0 U 1064 0 G 1065 0 U 1066 0 A 1067 0 U 1120 0 C 1126 0 C 1127 0 U 1128 0 C 1129 0 U 1130 0 G 1131 0 A 1231 0 A 1232 0 A 1236 0 U 1237 0 C 1238 0 C 2036 0 C 2037 0 G 2068 0 U 2387 0 A 2395 0 C 2396 0 U 2492 0 C 2493 0 G 2524 0 G 2525 0 U 2550 0 C 2551 0 C 2552 0 G 2558 0 A 2577 0 G 2578 0 G 2582 0 A 2583 0 U 2597 0 G 2679 0 A 2680 0 A 2681 0 G 2683 0 A 2684 0 C 2685 0 U 2705 0 C 2707 0 G 2708 0 G 2709 0 U 2710 0 U 2711 0 G 2712 0 G 2713 0 U 2714 0 C 2762 0 G 2763 0 C 2765 0 A 2766 0 C 2767 0 A 2768 0 C 2769 0 A 2800 0 A 2801 0 C 2802 0 C 2803 0 C 2804 0 A 2805 0 MG 8025 0 CL 9312 0 C 3091 9 G 3092 9 A 3093 9 2 1.09 1.09 16.7 -0.61 -0.82 6.2 92 0 1 0 0 0 0 0  A 485 0 A 486 0 G 487 0 U 488 0 G 504 0 C 505 0 G 506 0 G 512 0 3 1.08 3.60 17.3 1.41 0.28 5.6 80 0 3 0 4 2 0 0   4 1.04 1.31 15.9 -0.16 -0.32 9.8 67 0 1 0 3 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.