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PDBsum entry 1vq8
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Tunnel analysis for: 1vq8 calculated with  MOLE 2.0
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PDB id
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1vq8
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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22 tunnels,
coloured by tunnel radius |
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23 tunnels,
coloured by
tunnel radius
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23 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.20 |
1.43 |
119.4 |
-0.57 |
-0.61 |
8.6 |
77 |
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5 |
1 |
1 |
3 |
2 |
1 |
0 |
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A 114 0 U 115 0 A 117 0 G 118 0 A 119 0 A 131 0 A
132 0 C 764 0 G 765 0 A 766 0 U 768 0 C 769 0 C
770 0 G 771 0 G 772 0 A 773 0 C 774 0 A 867 0 G
868 0 G 869 0 G 887 0 U 888 0 C 889 0 C 890 0 G
891 0 G 892 0 C 893 0 A 895 0 C 896 0 A 897 0 U
1359 0 C 1360 0 C 1462 0 A 1463 0 U 1464 0 A 1465
0 C 1474 0 G 1475 0 U 1480 0 G 1481 0 A 2101 0 G
2480 0
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2 |
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1.23 |
1.49 |
124.2 |
-0.95 |
-0.66 |
12.0 |
84 |
7 |
1 |
1 |
2 |
0 |
1 |
0 |
C 764 0 G 765 0 A 766 0 U 768 0 C 769 0 C 770 0 G
771 0 G 772 0 A 773 0 G 868 0 G 869 0 G 887 0 U
888 0 C 889 0 C 890 0 G 891 0 G 892 0 C 893 0 A
895 0 C 896 0 A 897 0 U 1359 0 C 1360 0 G 1863 0
C 1864 0 A 1865 0 A 1909 0 A 2101 0 G 2121 0 C
2122 0 A 2123 0 G 2124 0 G 2125 0 C 2126 0 G 2263
0 U 2265 0 A 2266 0 G 2267 0 C 2268 0 C 2269 0 G
2270 0 G 2480 0
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3 |
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1.33 |
1.52 |
125.0 |
-0.94 |
-0.69 |
12.2 |
86 |
4 |
3 |
2 |
2 |
0 |
1 |
0 |
C 764 0 G 765 0 A 766 0 U 768 0 C 769 0 C 770 0 G
771 0 G 772 0 A 773 0 U 866 0 A 867 0 G 868 0 G
869 0 G 887 0 U 888 0 C 889 0 C 890 0 G 891 0 G
892 0 C 893 0 A 895 0 C 896 0 A 897 0 U 1359 0 C
1360 0 G 1460 0 U 1461 0 C 1474 0 G 1475 0 A 1476
0 C 1477 0 U 1478 0 C 1862 0 G 1863 0 G 1867 0 G
1868 0 A 1869 0 U 1871 0 C 1872 0 A 2101 0 C 2247
0 C 2248 0 G 2249 0 G 2480 0 MG 8050 0 SR 9497 A
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4 |
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1.16 |
1.37 |
126.3 |
-1.29 |
-0.59 |
16.7 |
82 |
10 |
3 |
2 |
4 |
0 |
2 |
0 |
U 645 0 G 646 0 U 647 0 G 648 0 U 649 0 C 650 0 U
651 0 G 652 0 C 653 0 U 655 0 G 656 0 G 657 0 C
658 0 A 659 0 G 747 0 C 748 0 C 749 0 A 750 0 U
751 0 U 753 0 G 755 0 A 756 0 C 757 0 A 761 0 C
762 0 C 763 0 C 764 0 G 765 0 A 766 0 A 895 0 C
896 0 A 897 0 U 1359 0 C 1360 0 A 2101 0 G 2480 0
SR 9420 0 CD 9205 O
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5 |
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1.19 |
1.37 |
132.2 |
-0.70 |
-0.69 |
8.9 |
84 |
4 |
1 |
1 |
2 |
0 |
1 |
0 |
G 118 0 A 119 0 A 120 0 U 123 0 C 124 0 U 125 0 C
764 0 G 765 0 A 766 0 U 768 0 C 769 0 C 770 0 G
771 0 G 772 0 A 773 0 C 774 0 U 864 0 G 865 0 U
866 0 A 867 0 G 868 0 G 869 0 G 887 0 U 888 0 C
889 0 C 890 0 G 891 0 G 892 0 C 893 0 A 895 0 C
896 0 A 897 0 U 1359 0 C 1360 0 G 1453 0 U 1454 0
C 1455 0 C 1456 0 G 1460 0 U 1461 0 C 1462 0 C
1474 0 G 1475 0 C 1483 0 G 1484 0 A 1485 0 A 1486
0 A 2101 0 G 2480 0
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6 |
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1.19 |
1.19 |
131.9 |
-0.66 |
-0.71 |
6.7 |
92 |
4 |
0 |
4 |
2 |
0 |
1 |
0 |
C 556 0 C 557 0 U 595 0 C 596 0 A 597 0 C 598 0 G
599 0 G 600 0 G 601 0 G 607 0 A 608 0 U 609 0 G
622 0 G 634 0 A 635 0 C 638 0 A 639 0 G 640 0 C
764 0 G 765 0 G 901 0 G 902 0 U 1320 0 A 1321 0 G
1322 0 G 1323 0 G 1324 0 G 1325 0 U 1326 0 A 1331
0 C 1332 0 U 1333 0 A 1355 0 A 1356 0 A 1357 0 A
1358 0 U 1359 0 C 1360 0 A 2101 0 G 2537 0 SR
9430 0
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7 |
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1.33 |
1.51 |
130.7 |
-0.89 |
-0.73 |
10.1 |
85 |
3 |
4 |
4 |
2 |
0 |
1 |
0 |
C 197 0 G 201 0 U 211 0 A 212 0 U 214 0 G 229 0 C
230 0 G 231 0 U 651 0 G 652 0 G 683 0 C 685 0 A
686 0 G 689 0 G 690 0 G 691 0 G 742 0 A 756 0 C
757 0 A 761 0 C 762 0 C 763 0 C 764 0 G 765 0 A
766 0 A 895 0 C 896 0 A 897 0 A 926 0 U 927 0 G
1038 0 G 1039 0 A 1040 0 U 1359 0 C 1360 0 A 2101
0 G 2480 0 NA 9184 0 SR 9420 0
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8 |
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1.23 |
1.47 |
135.2 |
-0.59 |
-0.68 |
8.7 |
79 |
1 |
1 |
1 |
2 |
1 |
1 |
0 |
C 764 0 G 765 0 A 766 0 A 767 0 U 768 0 C 769 0 U
845 0 U 883 0 U 888 0 C 890 0 G 891 0 G 892 0 C
893 0 A 895 0 C 896 0 A 897 0 U 1359 0 C 1360 0 G
1837 0 G 2099 0 A 2100 0 A 2101 0 A 2103 0 C 2477
0 U 2478 0 G 2480 0 U 2528 0 G 2529 0 G 2540 0
OMG 2588 0 U 2589 0 U 2590 0 G 2616 0 G 2618 0
UR3 2619 0 U 2620 0 A 2637 0 G 2639 0 G 2643 0 C
2644 0 U 2645 0 SR 9601 0 DC 74 4
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9 |
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1.20 |
1.44 |
135.2 |
-0.75 |
-0.66 |
7.0 |
83 |
4 |
1 |
2 |
2 |
0 |
2 |
0 |
U 651 0 G 652 0 G 740 0 C 741 0 G 742 0 A 756 0 C
757 0 A 761 0 C 762 0 C 763 0 C 764 0 G 765 0 A
766 0 A 895 0 C 896 0 A 897 0 A 926 0 U 927 0 G
1037 0 G 1038 0 G 1039 0 A 1040 0 U 1359 0 C 1360
0 A 2101 0 G 2397 0 A 2398 0 A 2430 0 C 2431 0 C
2432 0 A 2433 0 U 2435 0 U 2436 0 C 2439 0 C 2450
0 G 2451 0 G 2452 0 G 2453 0 C 2454 0 A 2455 0 A
2456 0 G 2480 0 SR 9420 0
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10 |
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1.30 |
1.47 |
138.8 |
-0.89 |
-0.68 |
12.0 |
80 |
6 |
3 |
1 |
3 |
0 |
1 |
0 |
C 764 0 G 765 0 A 766 0 U 768 0 C 769 0 C 770 0 G
771 0 G 772 0 A 773 0 U 866 0 A 867 0 G 868 0 G
869 0 G 887 0 U 888 0 C 889 0 C 890 0 G 891 0 G
892 0 C 893 0 A 895 0 C 896 0 A 897 0 U 1359 0 C
1360 0 A 1458 0 A 1459 0 G 1460 0 U 1461 0 C 1474
0 G 1475 0 A 1476 0 C 1477 0 U 1478 0 A 1479 0 A
1533 0 C 1534 0 G 1655 0 A 1657 0 A 1658 0 C 1862
0 G 1863 0 C 1872 0 A 2101 0 G 2480 0
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11 |
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1.19 |
1.19 |
137.9 |
-0.39 |
-0.70 |
5.1 |
83 |
2 |
1 |
1 |
3 |
0 |
1 |
0 |
U 624 0 U 625 0 U 626 0 A 632 0 C 633 0 G 634 0 C
764 0 G 765 0 G 901 0 C 1044 0 G 1045 0 G 1046 0
U 1047 0 G 1048 0 C 1049 0 G 1050 0 C 1051 0 G
1052 0 A 1058 0 C 1060 0 C 1061 0 U 1062 0 A 1358
0 U 1359 0 C 1360 0 A 2101 0 G 2481 0 G 2482 0 A
2483 0 C 2533 0 U 2535 0 G 2537 0 MG 8002 0 NA
9150 0 G 3078 9 U 3079 9 U 3082 9 G 3083 9 A 3093
9 G 3094 9 C 3095 9 C 3096 9 U 3097 9 C 3098 9 U
3099 9 G 3100 9 G 3102 9
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12 |
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1.33 |
1.52 |
140.0 |
-1.06 |
-0.65 |
12.7 |
81 |
6 |
2 |
4 |
3 |
1 |
1 |
0 |
U 22 0 G 23 0 A 466 0 G 467 0 U 468 0 A 476 0 G
500 0 G 501 0 A 502 0 G 503 0 A 509 0 U 510 0 G
512 0 A 513 0 G 514 0 C 764 0 G 765 0 A 766 0 A
767 0 U 768 0 C 769 0 A 844 0 A 882 0 U 883 0 U
888 0 C 889 0 C 890 0 G 891 0 G 892 0 C 893 0 A
895 0 C 896 0 A 897 0 U 1359 0 C 1360 0 A 1689 0
A 2101 0 G 2480 0 SR 9432 0
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13 |
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1.19 |
1.48 |
140.1 |
-1.15 |
-0.61 |
14.5 |
82 |
6 |
2 |
4 |
3 |
1 |
1 |
0 |
A 466 0 G 467 0 U 468 0 A 476 0 A 497 0 A 498 0 G
499 0 G 514 0 C 764 0 G 765 0 A 766 0 A 767 0 U
768 0 C 769 0 A 844 0 A 882 0 U 883 0 U 888 0 C
889 0 C 890 0 G 891 0 G 892 0 C 893 0 A 895 0 C
896 0 A 897 0 U 1359 0 C 1360 0 A 1424 0 G 1425 0
A 1427 0 C 1428 0 G 1441 0 A 1689 0 A 2101 0 G
2480 0
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14 |
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1.28 |
1.28 |
141.7 |
-0.40 |
-0.73 |
4.3 |
87 |
2 |
1 |
1 |
2 |
0 |
1 |
0 |
U 624 0 U 625 0 U 626 0 A 632 0 C 633 0 G 634 0 C
764 0 G 765 0 G 901 0 U 909 0 C 910 0 G 911 0 A
913 0 A 914 0 C 915 0 A 929 0 C 930 0 C 931 0 C
933 0 C 934 0 A 943 0 G 1031 0 A 1032 0 C 1033 0
C 1044 0 G 1045 0 G 1046 0 U 1062 0 G 1063 0 U
1064 0 G 1065 0 U 1066 0 A 1067 0 G 1269 0 U 1270
0 A 1271 0 C 1272 0 U 1279 0 A 1280 0 C 1281 0 C
1289 0 U 1298 0 G 1299 0 A 1358 0 U 1359 0 C 1360
0 A 2101 0 G 2481 0 G 2482 0 A 2483 0 C 2533 0 U
2535 0 G 2537 0 MG 8002 0 NA 9150 0
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15 |
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1.16 |
1.60 |
198.5 |
-0.60 |
-0.74 |
6.3 |
89 |
2 |
1 |
3 |
2 |
0 |
1 |
0 |
C 764 0 G 765 0 A 766 0 A 767 0 U 768 0 C 769 0 U
825 0 G 828 0 A 829 0 U 831 0 C 838 0 C 839 0 U
845 0 A 846 0 C 847 0 C 848 0 C 849 0 U 850 0 U
883 0 U 888 0 C 890 0 G 891 0 G 892 0 C 893 0 A
895 0 C 896 0 A 897 0 U 1359 0 C 1360 0 G 1378 0
A 1379 0 U 1380 0 A 1381 0 C 1403 0 C 1404 0 A
1407 0 A 1712 0 G 1713 0 C 1714 0 C 1808 0 G 1809
0 G 1837 0 U 1838 0 G 2099 0 A 2100 0 A 2101 0 A
2103 0 C 2477 0 U 2478 0 G 2480 0 C 2644 0 G 2646
0 C 2729 0 G 2730 0 G 2731 0 U 2732 0 A 2741 0 G
2742 0 A 2743 0 G 2744 0 C 2745 0 A 2746 0 C 2747
0 G 2748 0 U 2749 0 G 2750 0 C 2751 0 U 2866 0 G
2867 0 C 2868 0 A 2885 0 C 2886 0 MG 8024 0 SR
9445 0 SR 9450 0
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16 |
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1.17 |
1.54 |
196.1 |
-0.56 |
-0.74 |
6.7 |
82 |
2 |
1 |
1 |
2 |
0 |
1 |
0 |
C 764 0 G 765 0 A 766 0 A 767 0 U 768 0 C 769 0 U
794 0 G 795 0 U 825 0 G 828 0 A 829 0 U 831 0 C
838 0 C 839 0 U 845 0 A 846 0 C 847 0 C 848 0 C
849 0 U 850 0 U 883 0 U 888 0 C 890 0 G 891 0 G
892 0 C 893 0 A 895 0 C 896 0 A 897 0 U 1359 0 C
1360 0 G 1378 0 A 1379 0 A 1407 0 A 1712 0 G 1713
0 G 1739 0 G 1756 0 U 1757 0 U 1758 0 A 1759 0 C
1763 0 C 1764 0 G 1765 0 U 1766 0 G 1777 0 A 1778
0 G 1780 0 G 1781 0 G 1782 0 A 1783 0 A 1811 0 A
1815 0 C 1816 0 U 1817 0 C 1818 0 G 1819 0 G 1837
0 U 1838 0 G 2099 0 A 2100 0 A 2101 0 A 2103 0 C
2477 0 U 2478 0 G 2480 0 C 2644 0 G 2646 0 C 2752
0 SR 9445 0 SR 9477 0 SR 9484 0
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17 |
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1.17 |
1.56 |
196.5 |
-0.51 |
-0.75 |
5.9 |
84 |
1 |
1 |
1 |
2 |
0 |
1 |
0 |
C 764 0 G 765 0 A 766 0 A 767 0 U 768 0 C 769 0 A
788 0 C 789 0 U 825 0 A 827 0 G 828 0 A 829 0 U
831 0 C 838 0 C 839 0 U 845 0 A 846 0 C 847 0 C
848 0 C 849 0 U 850 0 U 883 0 U 888 0 C 890 0 G
891 0 G 892 0 C 893 0 A 895 0 C 896 0 A 897 0 U
1359 0 C 1360 0 A 1406 0 A 1407 0 U 1408 0 U 1488
0 G 1496 0 U 1505 0 U 1544 0 C 1545 0 G 1571 0 A
1572 0 C 1617 0 G 1618 0 G 1619 0 C 1620 0 G 1636
0 A 1637 0 A 1641 0 A 1642 0 C 1643 0 A 1682 0 G
1695 0 U 1696 0 G 1697 0 U 1698 0 C 1699 0 C 1700
0 A 1701 0 G 1837 0 U 1838 0 G 2099 0 A 2100 0 A
2101 0 A 2103 0 C 2477 0 U 2478 0 G 2480 0 C 2644
0 G 2646 0 SR 9445 0
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18 |
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1.13 |
1.58 |
209.0 |
-0.79 |
-0.71 |
7.8 |
82 |
6 |
3 |
3 |
2 |
0 |
2 |
0 |
U 651 0 G 652 0 G 739 0 G 740 0 C 741 0 G 742 0 A
756 0 C 757 0 A 761 0 C 762 0 C 763 0 C 764 0 G
765 0 A 766 0 A 895 0 C 896 0 A 897 0 A 926 0 U
927 0 G 1037 0 G 1038 0 G 1039 0 A 1040 0 U 1359
0 C 1360 0 A 2101 0 U 2322 0 G 2323 0 G 2324 0 C
2325 0 A 2327 0 U 2328 0 C 2329 0 C 2347 0 A 2370
0 G 2371 0 A 2372 0 U 2373 0 A 2374 0 G 2375 0 C
2376 0 U 2384 0 G 2385 0 U 2386 0 U 2387 0 G 2397
0 A 2398 0 G 2399 0 G 2400 0 A 2401 0 A 2402 0 C
2403 0 G 2418 0 U 2419 0 G 2420 0 G 2421 0 U 2422
0 G 2480 0 SR 9420 0 SR 9442 0 U 3039 9 C 3040 9
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19 |
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1.13 |
1.54 |
210.7 |
-1.03 |
-0.70 |
10.9 |
84 |
8 |
7 |
5 |
3 |
0 |
2 |
0 |
U 651 0 G 652 0 G 739 0 G 740 0 C 741 0 G 742 0 A
756 0 C 757 0 A 761 0 C 762 0 C 763 0 C 764 0 G
765 0 A 766 0 A 895 0 C 896 0 A 897 0 A 926 0 U
927 0 G 1037 0 G 1038 0 G 1039 0 A 1040 0 U 1359
0 C 1360 0 A 2101 0 G 2324 0 C 2325 0 U 2326 0 A
2327 0 U 2328 0 A 2368 0 A 2369 0 A 2370 0 U 2384
0 G 2385 0 U 2386 0 U 2387 0 G 2397 0 A 2398 0 G
2399 0 G 2400 0 A 2401 0 A 2402 0 C 2403 0 C 2417
0 G 2418 0 U 2419 0 G 2420 0 G 2421 0 U 2422 0 G
2480 0 SR 9420 0 SR 9442 0 C 3030 9 C 3031 9 G
3032 9 A 3044 9 A 3045 9 C 3046 9 A 3047 9 C 3048
9 SR 9588 9
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20 |
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1.16 |
1.59 |
214.7 |
-0.50 |
-0.68 |
6.1 |
90 |
2 |
5 |
6 |
6 |
0 |
1 |
0 |
U 624 0 U 625 0 U 626 0 A 632 0 C 633 0 G 634 0 C
764 0 G 765 0 G 901 0 G 956 0 C 1044 0 G 1045 0 G
1046 0 U 1047 0 G 1048 0 C 1049 0 G 1050 0 C 1051
0 G 1052 0 G 1055 0 A 1058 0 C 1060 0 C 1061 0 U
1062 0 A 1133 0 G 1135 0 U 1136 0 G 1137 0 C 1140
0 U 1141 0 C 1142 0 G 1214 0 A 1215 0 G 1216 0 G
1217 0 U 1220 0 G 1221 0 A 1222 0 G 1223 0 G 1224
0 A 1358 0 U 1359 0 C 1360 0 A 2101 0 G 2481 0 G
2482 0 A 2483 0 C 2533 0 U 2535 0 G 2537 0 G 2782
0 A 2783 0 A 2784 0 C 2785 0 G 2786 0 C 2787 0 A
2788 0 U 2789 0 MG 8002 0 NA 9150 0 NA 9152 0 C
3081 9 G 3092 9 A 3093 9 G 3094 9 C 3095 9 C 3096
9
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21 |
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1.38 |
1.38 |
18.9 |
-1.58 |
-0.65 |
19.1 |
95 |
2 |
1 |
1 |
0 |
0 |
0 |
0 |
G 964 0 A 965 0 U 966 0 U 967 0 G 968 0
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22 |
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1.11 |
1.11 |
17.4 |
-0.61 |
-0.82 |
6.2 |
92 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
A 485 0 A 486 0 G 487 0 U 488 0 A 489 0 G 504 0 C
505 0 G 512 0
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23 |
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1.21 |
1.21 |
17.2 |
-0.68 |
-0.69 |
2.8 |
87 |
0 |
0 |
1 |
0 |
0 |
1 |
0 |
A 1166 0 G 1167 0 C 1168 0 U 1169 0 C 1179 0 A
1181 0 A 1192 0
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program