PDBsum entry 1vpn Go to PDB code:  Tunnel analysis for: 1vpn calculated with MOLE 2.0 PDB id 1vpn Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.20 1.27 24.2 -1.57 -0.28 19.3 78 2 2 2 2 3 1 0   2 1.20 1.27 28.8 -1.28 -0.15 16.1 77 2 2 2 3 4 1 0   3 1.20 1.27 36.1 -1.49 -0.47 19.3 80 3 5 2 3 3 1 0   4 1.26 1.30 17.4 -1.03 -0.58 8.2 78 1 0 1 1 1 1 0   5 1.24 1.29 15.2 -1.20 -0.47 10.6 69 1 0 0 1 1 2 0   6 1.24 1.29 17.7 -1.13 -0.54 8.9 78 1 0 1 1 1 1 0   7 1.47 1.73 18.1 -0.34 -0.20 13.2 71 0 1 1 4 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.