PDBsum entry 1vpe Go to PDB code:  Tunnel analysis for: 1vpe calculated with MOLE 2.0 PDB id 1vpe Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.52 1.63 17.2 -0.28 -0.49 10.5 85 2 2 0 2 0 0 0   2 1.58 1.63 20.6 -0.64 -0.04 18.3 79 2 2 1 2 2 0 0   3 1.58 1.63 20.7 -0.66 0.00 18.1 81 2 1 1 3 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.