PDBsum entry 1vpd Go to PDB code:  Tunnel analysis for: 1vpd calculated with MOLE 2.0 PDB id 1vpd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.37 1.39 35.3 1.43 0.27 3.8 79 2 1 1 9 4 1 0  MSE 13 A MSE 17 A MSE 65 A MSE 95 A MSE 152 A MSE 155 A 2 1.38 1.40 44.4 1.51 0.31 4.0 87 2 0 3 12 4 0 0  MSE 13 A MSE 17 A MSE 65 A MSE 95 A MSE 152 A MSE 155 A TLA 501 A 3 1.26 1.31 24.0 -0.54 -0.41 14.4 85 1 4 3 4 0 1 0  MSE 117 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.