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PDBsum entry 1vow
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Top Page protein dna_rna Protein-protein interface(s) tunnels links
Tunnel analysis for: 1vow calculated with MOLE 2.0 PDB id
1vow
Tunnels calculated on whole structure Tunnels calculated excluding ligands
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36 tunnels, coloured by tunnel radius 36 tunnels, coloured by tunnel radius 36 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.60 1.60 77.9 -0.75 -0.57 8.4 82 5 0 4 1 2 0 0  A 698 B U 701 B A 702 B A 703 B U 786 B A 787 B G
791 B U 792 B G 793 B A 794 B G 798 B C 799 B U
800 B U 1768 B A 1782 B G 1783 B C 1784 B A 1785
B U 1787 B G 1806 B U 1812 B G 1814 B G 1815 B U
1817 B
2 1.42 1.42 77.7 -0.68 -0.55 7.8 82 5 0 4 1 2 0 0  A 698 B U 701 B A 702 B A 703 B U 786 B A 787 B A
790 B G 791 B U 792 B G 793 B A 794 B G 798 B C
799 B U 800 B U 1768 B A 1782 B G 1783 B C 1784 B
A 1785 B U 1787 B G 1806 B U 1812 B G 1814 B G
1815 B U 1817 B
3 1.36 1.36 78.5 -0.78 -0.61 9.1 62 2 0 0 0 1 0 0  A 698 B G 699 B C 700 B U 701 B A 702 B A 703 B G
704 B A 706 B G 708 B A 709 B U 779 B U 780 B G
781 B U 782 B G 783 B U 784 B U 786 B A 787 B G
791 B U 800 B A 1395 B A 1397 B G 1438 B G 1440 B
A 1441 B C 1442 B G 1443 B C 1529 B U 1530 B C
1531 B C 1572 B G 1573 B A 1574 B G 1589 B C 1590
B
4 1.31 1.31 78.3 -0.78 -0.61 9.1 62 2 0 0 0 1 0 0  A 698 B G 699 B C 700 B U 701 B A 702 B A 703 B G
704 B A 706 B G 708 B A 709 B U 779 B U 780 B G
781 B U 782 B G 783 B U 784 B U 786 B A 787 B A
790 B G 791 B U 800 B A 1395 B A 1397 B G 1438 B
G 1440 B A 1441 B C 1442 B G 1443 B C 1529 B U
1530 B C 1531 B C 1572 B G 1573 B A 1574 B G 1589
B C 1590 B
5 1.33 1.33 78.5 -0.68 -0.62 7.5 62 2 0 0 0 1 0 0  A 698 B G 699 B C 700 B U 701 B A 702 B A 703 B G
704 B A 706 B A 709 B C 710 B C 711 B G 713 B G
714 B U 779 B U 780 B G 781 B U 782 B G 783 B U
784 B U 786 B A 787 B A 790 B G 791 B U 800 B G
1443 B C 1444 B A 1445 B U 1446 B U 1447 B A 1448
B A 1568 B A 1569 B C 1570 B G 1735 B
6 1.39 1.39 78.6 -0.68 -0.63 7.5 62 2 0 0 0 1 0 0  A 698 B G 699 B C 700 B U 701 B A 702 B A 703 B G
704 B A 706 B A 709 B C 710 B C 711 B G 713 B G
714 B U 779 B U 780 B G 781 B U 782 B G 783 B U
784 B U 786 B A 787 B G 791 B U 800 B G 1443 B C
1444 B A 1445 B U 1446 B U 1447 B A 1448 B A 1568
B A 1569 B C 1570 B G 1735 B
7 1.41 1.41 82.8 -0.92 -0.62 11.8 73 2 1 0 1 1 0 0  A 698 B G 699 B C 700 B U 701 B A 702 B A 703 B G
704 B A 706 B G 708 B A 709 B U 779 B U 780 B G
781 B U 782 B G 783 B U 784 B U 786 B A 787 B A
790 B G 791 B U 800 B C 1442 B G 1443 B C 1444 B
G 1496 B C 1575 B G 1577 B U 1578 B G 1579 B C
1580 B
8 1.43 1.43 83.0 -0.87 -0.63 11.0 73 2 1 0 1 1 0 0  A 698 B G 699 B C 700 B U 701 B A 702 B A 703 B G
704 B A 706 B G 708 B A 709 B U 779 B U 780 B G
781 B U 782 B G 783 B U 784 B U 786 B A 787 B G
791 B U 800 B C 1442 B G 1443 B C 1444 B G 1496 B
C 1575 B G 1577 B U 1578 B G 1579 B C 1580 B
9 1.42 1.42 83.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  A 698 B U 701 B A 702 B U 786 B A 787 B A 790 B G
791 B U 792 B G 798 B C 799 B U 800 B C 803 B G
805 B U 1769 B U 1770 B A 1771 B C 1772 B C 1773
B A 2041 B A 2042 B G 2044 B C 2046 B G 2231 B C
2419 B C 2421 B A 2429 B A 2430 B A 2482 B G 2484
B U 2564 B C 2565 B A 2566 B C 2580 B A 2581 B G
2582 B U 2588 B
10 1.42 1.42 83.9 -0.81 -0.70 9.4 83 5 0 0 2 0 0 0  A 117 B G 122 B A 123 B U 144 B C 145 B U 154 B G
188 B A 189 B A 698 B G 699 B C 700 B U 701 B A
702 B G 781 B U 782 B G 783 B U 784 B U 785 B U
786 B A 787 B G 791 B U 800 B G 1369 B U 1370 B G
1371 B A 1372 B C 1380 B G 1381 B G 1390 B A 1391
B
11 1.56 1.56 83.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  A 698 B U 701 B A 702 B U 786 B A 787 B G 791 B U
792 B G 798 B C 799 B U 800 B C 803 B G 805 B U
1769 B U 1770 B A 1771 B C 1772 B C 1773 B A 2041
B A 2042 B G 2044 B C 2046 B G 2231 B C 2419 B C
2421 B A 2429 B A 2430 B A 2482 B G 2484 B U 2564
B C 2565 B A 2566 B C 2580 B A 2581 B G 2582 B U
2588 B
12 1.45 1.45 83.7 -0.78 -0.69 9.1 83 5 0 0 2 0 0 0  A 117 B G 122 B A 123 B U 144 B C 145 B U 154 B G
188 B A 189 B A 698 B G 699 B C 700 B U 701 B A
702 B G 781 B U 782 B G 783 B U 784 B U 785 B U
786 B A 787 B A 790 B G 791 B U 800 B G 1369 B U
1370 B G 1371 B A 1372 B C 1380 B G 1381 B G 1390
B A 1391 B
13 1.41 1.41 85.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  A 698 B U 701 B A 702 B U 786 B A 787 B A 790 B G
791 B U 792 B G 798 B C 799 B U 800 B C 803 B G
805 B U 1769 B U 1770 B A 1771 B C 1772 B C 1773
B A 2041 B A 2042 B G 2044 B C 2046 B C 2419 B C
2421 B A 2430 B C 2431 B U 2472 B A 2482 B G 2484
B U 2485 B G 2532 B U 2534 B C 2552 B U 2564 B C
2565 B A 2566 B A 2581 B U 2588 B
14 1.57 1.57 85.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  A 698 B U 701 B A 702 B U 786 B A 787 B G 791 B U
792 B G 798 B C 799 B U 800 B C 803 B G 805 B U
1769 B U 1770 B A 1771 B C 1772 B C 1773 B A 2041
B A 2042 B G 2044 B C 2046 B C 2419 B C 2421 B A
2430 B C 2431 B U 2472 B A 2482 B G 2484 B U 2485
B G 2532 B U 2534 B C 2552 B U 2564 B C 2565 B A
2566 B A 2581 B U 2588 B
15 1.36 1.36 86.6 -0.66 -0.23 9.6 65 4 0 0 1 2 0 0  A 698 B G 699 B C 700 B U 701 B A 702 B A 703 B G
704 B A 706 B A 719 B A 720 B G 732 B A 740 B G
741 B G 776 B U 779 B U 780 B G 781 B U 782 B G
783 B U 784 B U 786 B A 787 B G 791 B U 800 B G
1443 B C 1444 B C 1580 B A 1582 B
16 1.39 1.39 86.5 -0.66 -0.22 9.4 65 4 0 0 1 2 0 0  A 698 B G 699 B C 700 B U 701 B A 702 B A 703 B G
704 B A 706 B A 719 B A 720 B G 732 B A 740 B G
741 B G 776 B U 779 B U 780 B G 781 B U 782 B G
783 B U 784 B U 786 B A 787 B A 790 B G 791 B U
800 B G 1443 B C 1444 B C 1580 B A 1582 B
17 1.42 1.42 97.0 -0.41 -0.36 5.8 77 4 0 2 1 3 1 0  A 698 B U 701 B A 702 B A 703 B U 786 B A 787 B A
790 B G 791 B U 792 B G 793 B A 794 B G 798 B C
799 B U 800 B U 1768 B A 1796 B C 1797 B G 1816 B
U 1833 B G 1834 B C 1835 B C 1836 B G 1874 B C
1875 B U 2059 B A 2065 B G 2066 B U 2067 B G 2214
B C 2215 B
18 1.65 1.65 96.0 -0.36 -0.77 3.4 93 0 0 0 1 0 0 0  A 698 B U 701 B A 702 B A 748 B C 749 B G 751 B G
752 B A 766 B G 767 B U 768 B C 769 B U 786 B A
787 B G 791 B U 792 B G 798 B C 799 B U 800 B C
1311 B A 1314 B A 1315 B G 1636 B U 1637 B C 1653
B A 1654 B C 1677 B G 1678 B C 1696 B U 1697 B C
1698 B A 1746 B G 1749 B A 1750 B A 1751 B U 1752
B A 1753 B U 1769 B A 1771 B C 1772 B C 2691 B A
2696 B
19 1.48 1.48 95.8 -0.35 -0.76 3.3 93 0 0 0 1 0 0 0  A 698 B U 701 B A 702 B A 748 B C 749 B G 751 B G
752 B A 766 B G 767 B U 768 B C 769 B U 786 B A
787 B A 790 B G 791 B U 792 B G 798 B C 799 B U
800 B C 1311 B A 1314 B A 1315 B G 1636 B U 1637
B C 1653 B A 1654 B C 1677 B G 1678 B C 1696 B U
1697 B C 1698 B A 1746 B G 1749 B A 1750 B A 1751
B U 1752 B A 1753 B U 1769 B A 1771 B C 1772 B C
2691 B A 2696 B
20 1.63 1.63 97.1 -0.40 -0.37 5.9 78 4 0 2 1 3 0 0  A 698 B U 701 B A 702 B A 703 B U 786 B A 787 B G
791 B U 792 B G 793 B A 794 B G 798 B C 799 B U
800 B U 1768 B A 1796 B C 1797 B G 1816 B U 1833
B G 1834 B C 1835 B C 1836 B G 1874 B C 1875 B U
2059 B A 2065 B G 2066 B U 2067 B G 2214 B C 2215
B
21 1.68 1.68 105.0 -0.35 -0.76 3.3 93 0 0 0 1 0 0 0  A 698 B U 701 B A 702 B G 714 B U 715 B U 716 B G
717 B C 745 B G 746 B A 747 B A 748 B C 749 B G
751 B G 752 B A 766 B G 767 B U 768 B C 769 B U
770 B U 786 B A 787 B G 791 B U 792 B G 798 B C
799 B U 800 B G 1636 B U 1637 B C 1648 B A 1649 B
A 1650 B G 1652 B A 1699 B C 1700 B C 1701 B C
1702 B C 1703 B G 1704 B U 1705 B G 1716 B U 1752
B A 1753 B U 1769 B A 1771 B C 1772 B
22 1.43 1.43 104.8 -0.36 -0.77 3.4 93 0 0 0 1 0 0 0  A 698 B U 701 B A 702 B G 714 B U 715 B U 716 B G
717 B C 745 B G 746 B A 747 B A 748 B C 749 B G
751 B G 752 B A 766 B G 767 B U 768 B C 769 B U
770 B U 786 B A 787 B A 790 B G 791 B U 792 B G
798 B C 799 B U 800 B G 1636 B U 1637 B C 1648 B
A 1649 B A 1650 B G 1652 B A 1699 B C 1700 B C
1701 B C 1702 B C 1703 B G 1704 B U 1705 B G 1716
B U 1752 B A 1753 B U 1769 B A 1771 B C 1772 B
23 1.45 1.45 109.4 -0.81 -0.57 8.0 77 3 0 0 3 1 1 0  A 471 B C 473 B U 475 B G 479 B G 480 B A 481 B A
518 B A 698 B U 701 B A 702 B A 764 B U 786 B A
787 B A 790 B G 791 B U 792 B G 798 B C 799 B U
800 B A 802 B C 803 B G 805 B C 809 B A 1334 B C
1347 B C 1631 B U 1769 B U 1770 B A 1771 B C 1772
B C 1773 B A 2042 B C 2419 B C 2421 B A 2566 B
24 1.55 1.55 109.6 -0.75 -0.57 7.3 77 3 0 0 3 1 1 0  A 471 B C 473 B U 475 B G 479 B G 480 B A 481 B A
518 B A 698 B U 701 B A 702 B A 764 B U 786 B A
787 B G 791 B U 792 B G 798 B C 799 B U 800 B A
802 B C 803 B G 805 B C 809 B A 1334 B C 1347 B C
1631 B U 1769 B U 1770 B A 1771 B C 1772 B C 1773
B A 2042 B C 2419 B C 2421 B A 2566 B
25 1.31 1.31 119.0 -0.95 -0.47 13.3 67 6 0 0 2 3 1 0  A 698 B G 699 B C 700 B U 701 B A 702 B A 703 B G
704 B A 706 B U 707 B A 709 B U 779 B U 780 B G
781 B U 782 B G 783 B U 784 B U 786 B A 787 B A
790 B G 791 B U 800 B U 1365 B A 1366 B A 1386 B
G 1387 B U 1434 B G 1443 B G 1584 B A 1585 B A
1586 B G 2186 B A 2187 B A 2188 B A 2189 B A 2190
B A 2191 B U 2192 B C 2193 B A 2194 B C 2195 B U
2196 B
26 1.28 1.28 119.2 -0.92 -0.48 12.9 67 6 0 0 2 3 1 0  A 698 B G 699 B C 700 B U 701 B A 702 B A 703 B G
704 B A 706 B U 707 B A 709 B U 779 B U 780 B G
781 B U 782 B G 783 B U 784 B U 786 B A 787 B G
791 B U 800 B U 1365 B A 1366 B A 1386 B G 1387 B
U 1434 B G 1443 B G 1584 B A 1585 B A 1586 B G
2186 B A 2187 B A 2188 B A 2189 B A 2190 B A 2191
B U 2192 B C 2193 B A 2194 B C 2195 B U 2196 B
27 1.71 1.71 130.2 -0.31 -0.75 3.3 73 0 0 0 2 0 0 0  A 698 B U 701 B A 702 B A 748 B C 749 B G 751 B G
752 B A 766 B G 767 B U 768 B U 786 B A 787 B G
791 B U 792 B G 798 B C 799 B U 800 B A 1285 B A
1287 B A 1290 B G 1291 B A 1292 B A 1293 B G 1294
B U 1295 B G 1296 B A 1299 B A 1300 B U 1301 B C
1302 B U 1303 B C 1305 B A 1314 B A 1315 B G 1345
B A 1625 B A 1626 B A 1634 B G 1635 B G 1636 B U
1637 B C 1661 B G 1662 B C 1663 B U 1769 B A 1771
B C 1772 B
28 1.45 1.45 130.1 -0.31 -0.75 3.3 73 0 0 0 2 0 0 0  A 698 B U 701 B A 702 B A 748 B C 749 B G 751 B G
752 B A 766 B G 767 B U 768 B U 786 B A 787 B A
790 B G 791 B U 792 B G 798 B C 799 B U 800 B A
1285 B A 1287 B A 1290 B G 1291 B A 1292 B A 1293
B G 1294 B U 1295 B G 1296 B A 1299 B A 1300 B U
1301 B C 1302 B U 1303 B C 1305 B A 1314 B A 1315
B G 1345 B A 1625 B A 1626 B A 1634 B G 1635 B G
1636 B U 1637 B C 1661 B G 1662 B C 1663 B U 1769
B A 1771 B C 1772 B
29 1.50 1.50 138.3 -0.64 -0.52 7.5 74 5 2 3 1 4 2 0  A 698 B U 701 B A 702 B A 703 B U 786 B A 787 B A
790 B G 791 B U 792 B G 793 B A 794 B G 798 B C
799 B U 800 B C 1376 B U 1768 B C 1792 B A 1793 B
A 1794 B A 1796 B C 1797 B G 1798 B A 1799 B A
1800 B C 1801 B G 1816 B A 2065 B G 2066 B U 2067
B A 2181 B A 2182 B C 2183 B C 2184 B U 2196 B U
2197 B U 2198 B C 2199 B C 2206 B G 2207 B U 2208
B G 2218 B U 3197 B
30 1.73 1.93 138.5 -0.62 -0.50 7.6 74 5 2 3 1 4 2 0  A 698 B U 701 B A 702 B A 703 B U 786 B A 787 B A
790 B G 791 B U 792 B G 793 B A 794 B G 798 B C
799 B U 800 B C 1376 B U 1768 B C 1792 B A 1793 B
A 1794 B A 1796 B C 1797 B G 1798 B A 1799 B A
1800 B C 1801 B G 1816 B A 2065 B G 2066 B U 2067
B A 2181 B A 2182 B C 2183 B C 2184 B U 2196 B U
2197 B U 2198 B C 2199 B C 2206 B G 2207 B U 2208
B G 2218 B U 3197 B
31 1.49 1.49 151.4 -0.43 -0.74 4.4 97 1 0 0 2 0 0 0  A 14 B A 698 B U 701 B A 702 B A 748 B C 749 B G
751 B G 752 B U 757 B G 758 B A 766 B G 767 B U
768 B C 769 B U 786 B A 787 B A 790 B G 791 B U
792 B G 798 B C 799 B U 800 B U 1280 B A 1281 B A
1282 B C 1283 B G 1284 B U 1286 B A 1287 B C 1311
B A 1314 B A 1315 B G 1636 B U 1637 B C 1653 B C
1665 B G 1666 B C 1675 B U 1676 B U 1769 B A 1771
B C 1772 B G 1986 B G 1987 B A 1988 B C 1989 B U
1990 B C 1991 B G 2029 B U 2030 B G 2603 B G 2604
B C 2691 B C 2799 B C 2800 B U 2863 B
32 1.72 1.72 151.6 -0.43 -0.76 4.2 97 1 0 0 2 0 0 0  A 14 B A 698 B U 701 B A 702 B A 748 B C 749 B G
751 B G 752 B U 757 B G 758 B A 766 B G 767 B U
768 B C 769 B U 786 B A 787 B G 791 B U 792 B G
798 B C 799 B U 800 B U 1280 B A 1281 B A 1282 B
C 1283 B G 1284 B U 1286 B A 1287 B C 1311 B A
1314 B A 1315 B G 1636 B U 1637 B C 1653 B C 1665
B G 1666 B C 1675 B U 1676 B U 1769 B A 1771 B C
1772 B G 1986 B G 1987 B A 1988 B C 1989 B U 1990
B C 1991 B G 2029 B U 2030 B G 2603 B G 2604 B C
2691 B C 2799 B C 2800 B U 2863 B
33 1.56 1.56 155.4 -0.85 -0.62 9.1 83 6 0 2 1 2 1 0  G 38 B C 39 B U 40 B G 41 B G 42 B A 158 B A 159
B A 443 B U 444 B A 445 B C 446 B U 447 B C 463 B
G 464 B G 469 B C 473 B U 475 B G 479 B G 480 B A
481 B A 599 B A 619 B G 620 B U 621 B G 623 B A
683 B A 698 B U 701 B A 702 B A 764 B U 786 B A
787 B G 791 B U 792 B G 798 B C 799 B U 800 B A
802 B C 803 B G 805 B C 809 B G 812 B A 813 B U
1769 B U 1770 B A 1771 B C 1772 B C 1773 B A 2042
B C 2419 B C 2421 B A 2566 B
34 1.49 1.49 155.3 -0.81 -0.61 8.8 83 6 0 2 1 2 1 0  G 38 B C 39 B U 40 B G 41 B G 42 B A 158 B A 159
B A 443 B U 444 B A 445 B C 446 B U 447 B C 463 B
G 464 B G 469 B C 473 B U 475 B G 479 B G 480 B A
481 B A 599 B A 619 B G 620 B U 621 B G 623 B A
683 B A 698 B U 701 B A 702 B A 764 B U 786 B A
787 B A 790 B G 791 B U 792 B G 798 B C 799 B U
800 B A 802 B C 803 B G 805 B C 809 B G 812 B A
813 B U 1769 B U 1770 B A 1771 B C 1772 B C 1773
B A 2042 B C 2419 B C 2421 B A 2566 B
35 1.65 1.65 199.3 -0.86 -0.65 9.4 80 7 1 2 2 1 0 0  C 4 B A 698 B U 701 B A 702 B A 748 B C 749 B G
751 B G 752 B A 766 B G 767 B U 768 B C 769 B U
786 B A 787 B G 791 B U 792 B G 798 B C 799 B U
800 B A 1287 B C 1311 B A 1314 B A 1315 B G 1636
B U 1637 B C 1653 B C 1673 B U 1676 B C 1677 B A
1694 B U 1695 B U 1769 B A 1771 B C 1772 B U 1976
B A 1980 B A 1981 B C 1982 B G 1983 B C 2026 B U
2599 B A 2600 B C 2601 B G 2602 B G 2604 B G 2606
B G 2609 B G 2610 B A 2611 B A 2613 B U 2615 B G
2620 B G 2621 B G 2622 B G 2656 B G 2657 B A 2658
B C 2691 B C 2703 B U 2704 B C 2754 B A 2755 B A
2756 B G 2757 B G 2762 B U 2763 B U 2764 B C 2765
B U 2766 B C 2767 B A 2801 B G 2868 B
36 1.43 1.43 199.1 -0.83 -0.64 8.9 80 7 1 2 2 1 0 0  C 4 B A 698 B U 701 B A 702 B A 748 B C 749 B G
751 B G 752 B A 766 B G 767 B U 768 B C 769 B U
786 B A 787 B A 790 B G 791 B U 792 B G 798 B C
799 B U 800 B A 1287 B C 1311 B A 1314 B A 1315 B
G 1636 B U 1637 B C 1653 B C 1673 B U 1676 B C
1677 B A 1694 B U 1695 B U 1769 B A 1771 B C 1772
B U 1976 B A 1980 B A 1981 B C 1982 B G 1983 B C
2026 B U 2599 B A 2600 B C 2601 B G 2602 B G 2604
B G 2606 B G 2609 B G 2610 B A 2611 B A 2613 B U
2615 B G 2620 B G 2621 B G 2622 B G 2656 B G 2657
B A 2658 B C 2691 B C 2703 B U 2704 B C 2754 B A
2755 B A 2756 B G 2757 B G 2762 B U 2763 B U 2764
B C 2765 B U 2766 B C 2767 B A 2801 B G 2868 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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