 |
PDBsum entry 1vou
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 1vou calculated with  MOLE 2.0
|
PDB id
|
|
|
|
1vou
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
16 tunnels,
coloured by tunnel radius |
|
16 tunnels,
coloured by
tunnel radius
|
16 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.24 |
1.24 |
80.3 |
-1.42 |
-0.57 |
18.4 |
82 |
|
3 |
0 |
0 |
0 |
0 |
0 |
0 |
|
C 759 B U 760 B C 1772 B A 1998 B A 2034 B G 2035
B G 2036 B A 2037 B A 2041 B A 2042 B G 2044 B C
2046 B G 2231 B A 2429 B A 2430 B A 2482 B G 2484
B A 2556 B U 2564 B C 2565 B C 2580 B A 2581 B G
2582 B U 2588 B C 2591 B U 2592 B A 2593 B U 2594
B C 2595 B
|
 |
|
2 |
 |
1.24 |
1.24 |
86.2 |
-1.36 |
-0.58 |
17.6 |
82 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
C 759 B U 760 B C 1772 B A 1998 B A 2034 B G 2035
B G 2036 B A 2037 B A 2041 B A 2042 B G 2044 B C
2046 B A 2430 B C 2431 B A 2482 B G 2484 B U 2485
B U 2534 B C 2552 B A 2556 B U 2564 B C 2565 B A
2581 B U 2588 B C 2591 B U 2592 B A 2593 B U 2594
B C 2595 B
|
|
3 |
 |
1.24 |
1.24 |
91.2 |
-0.74 |
-0.70 |
8.7 |
87 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
U 757 B G 758 B G 767 B U 768 B C 769 B A 1281 B
A 1282 B C 1283 B U 1286 B A 1287 B C 1675 B U
1676 B C 1677 B G 1678 B C 1696 B U 1697 B C 1698
B G 1749 B A 1750 B A 1751 B U 1752 B A 1753 B G
1986 B G 1987 B A 2034 B G 2035 B G 2036 B A 2037
B A 2556 B C 2591 B U 2592 B A 2593 B U 2594 B C
2595 B C 2691 B A 2696 B
|
|
4 |
 |
1.24 |
1.24 |
94.3 |
-0.90 |
-0.62 |
10.8 |
82 |
4 |
0 |
0 |
1 |
0 |
1 |
0 |
G 16 B G 17 B C 19 B C 20 B U 535 B A 536 B G 543
B U 544 B C 545 B U 561 B G 562 B U 563 B U 564 B
A 565 B U 566 B A 1231 B U 1232 B U 1276 B G 1277
B U 2004 B U 2005 B C 2027 B C 2028 B G 2029 B A
2034 B G 2035 B G 2036 B A 2037 B A 2556 B A 2593
B U 2594 B C 2595 B
|
|
5 |
 |
1.25 |
1.25 |
96.9 |
-0.75 |
-0.70 |
8.1 |
82 |
3 |
0 |
0 |
0 |
0 |
1 |
0 |
A 14 B U 1276 B G 1277 B U 2005 B A 2025 B C 2026
B C 2028 B G 2029 B U 2030 B A 2034 B G 2035 B G
2036 B A 2037 B A 2556 B A 2593 B U 2594 B C 2595
B C 2596 B G 2597 B C 2598 B A 2600 B C 2601 B G
2602 B G 2603 B G 2604 B C 2605 B G 2606 B A 2611
B G 2612 B A 2755 B G 2757 B A 2787 B A 2801 B U
2863 B C 2864 B
|
|
6 |
 |
1.24 |
1.24 |
101.7 |
-0.79 |
-0.69 |
8.4 |
82 |
3 |
0 |
0 |
0 |
0 |
1 |
0 |
C 4 B U 1276 B G 1277 B U 2005 B A 2025 B C 2026
B C 2028 B G 2029 B U 2030 B A 2034 B G 2035 B G
2036 B A 2037 B A 2556 B A 2593 B U 2594 B C 2595
B C 2596 B G 2597 B C 2598 B A 2600 B C 2601 B G
2602 B G 2604 B G 2606 B G 2609 B A 2611 B A 2613
B U 2615 B A 2755 B A 2756 B G 2757 B G 2762 B U
2763 B U 2764 B C 2765 B U 2766 B C 2767 B A 2801
B G 2868 B
|
|
7 |
 |
1.23 |
1.23 |
104.1 |
-1.19 |
-0.36 |
15.1 |
81 |
6 |
0 |
0 |
3 |
1 |
0 |
0 |
U 470 B A 471 B C 473 B U 475 B G 478 B G 479 B G
480 B A 481 B A 518 B C 759 B U 760 B A 764 B A
802 B C 803 B C 809 B A 1334 B C 1772 B A 1998 B
A 2034 B G 2035 B G 2036 B A 2037 B A 2041 B A
2556 B C 2591 B U 2592 B A 2593 B U 2594 B C 2595
B
|
|
8 |
 |
1.23 |
1.23 |
106.0 |
-0.56 |
-0.56 |
8.4 |
85 |
4 |
0 |
1 |
2 |
1 |
1 |
0 |
U 1276 B G 1277 B U 2005 B A 2025 B C 2026 B C
2028 B G 2029 B U 2030 B A 2034 B G 2035 B G 2036
B A 2037 B A 2556 B A 2593 B U 2594 B C 2595 B C
2596 B G 2597 B C 2598 B A 2600 B C 2601 B G 2602
B G 2604 B A 2613 B A 2614 B U 2615 B U 2616 B C
2751 B C 2752 B C 2753 B C 2754 B A 2755 B A 2756
B G 2757 B A 2801 B
|
|
9 |
 |
1.27 |
1.27 |
109.0 |
-0.54 |
-0.36 |
12.6 |
82 |
7 |
1 |
1 |
4 |
1 |
2 |
0 |
G 1149 B U 1276 B G 1277 B U 2005 B U 2024 B A
2025 B C 2026 B C 2028 B G 2029 B U 2030 B A 2034
B G 2035 B G 2036 B A 2037 B A 2556 B A 2593 B U
2594 B C 2595 B C 2596 B G 2597 B C 2598 B U 2599
B A 2600 B C 2601 B A 2618 B G 2620 B C 2754 B G
2760 B
|
|
10 |
 |
1.25 |
1.25 |
111.2 |
-0.62 |
-0.47 |
10.3 |
82 |
7 |
0 |
1 |
3 |
1 |
2 |
0 |
U 1276 B G 1277 B A 1278 B G 1279 B U 1280 B U
1990 B C 1991 B G 2029 B U 2030 B A 2031 B A 2034
B G 2035 B G 2036 B A 2037 B A 2556 B A 2593 B U
2594 B C 2595 B C 2790 B C 2791 B C 2792 B A 2798
B C 2799 B C 2800 B C 2857 B A 2858 B U 2859 B
|
|
11 |
 |
1.28 |
1.28 |
113.0 |
-1.34 |
-0.59 |
15.7 |
81 |
6 |
1 |
3 |
2 |
0 |
1 |
0 |
G 758 B A 1281 B A 1282 B C 1283 B G 1284 B U
1286 B G 1666 B A 1667 B G 1668 B G 1986 B G 1987
B A 2034 B G 2035 B G 2036 B A 2037 B A 2556 B C
2591 B U 2592 B A 2593 B U 2594 B C 2595 B C 2670
B G 2814 B C 2815 B C 2816 B A 2817 B G 2818 B G
2844 B C 2845 B G 2846 B G 2847 B
|
|
12 |
|
1.28 |
1.28 |
115.9 |
-0.94 |
-0.71 |
11.2 |
81 |
4 |
1 |
0 |
0 |
0 |
0 |
0 |
C 759 B U 760 B G 798 B C 803 B G 805 B U 1770 B
A 1771 B C 1772 B C 1773 B G 1831 B G 1832 B G
1886 B G 1887 B A 1998 B A 2034 B G 2035 B G 2036
B A 2037 B A 2041 B A 2042 B C 2419 B C 2421 B A
2556 B C 2565 B A 2566 B G 2567 B A 2568 B A 2569
B C 2570 B G 2571 B U 2572 B C 2573 B G 2574 B U
2575 B G 2576 B G 2578 B A 2579 B U 2588 B C 2591
B U 2592 B A 2593 B U 2594 B C 2595 B
|
|
13 |
|
1.28 |
1.28 |
125.2 |
-0.81 |
-0.66 |
10.2 |
80 |
7 |
3 |
0 |
3 |
1 |
1 |
0 |
U 1276 B G 1277 B U 2005 B A 2025 B C 2026 B C
2028 B G 2029 B U 2030 B A 2034 B G 2035 B G 2036
B A 2037 B U 2493 B A 2520 B A 2521 B G 2522 B A
2556 B A 2593 B U 2594 B C 2595 B C 2596 B G 2597
B C 2598 B U 2599 B A 2600 B C 2601 B G 2620 B G
2621 B G 2622 B A 2623 B U 2719 B A 2720 B A 2737
B G 2739 B G 2746 B C 2747 B C 2754 B
|
|
14 |
|
1.23 |
1.23 |
147.9 |
-1.14 |
-0.55 |
12.7 |
82 |
9 |
0 |
2 |
1 |
2 |
0 |
0 |
A 158 B A 159 B C 160 B U 161 B C 162 B A 163 B A
181 B G 182 B U 183 B A 184 B A 195 B A 196 B U
212 B C 213 B C 214 B G 395 B U 396 B U 397 B G
406 B G 438 B A 445 B C 446 B G 464 B G 469 B C
473 B U 475 B G 478 B G 479 B G 480 B C 759 B U
760 B A 764 B A 802 B C 803 B C 809 B C 1772 B A
1998 B A 2034 B G 2035 B G 2036 B A 2037 B A 2041
B A 2556 B C 2591 B U 2592 B A 2593 B U 2594 B C
2595 B
|
|
15 |
|
1.25 |
1.25 |
155.5 |
-0.88 |
-0.69 |
10.6 |
87 |
6 |
0 |
2 |
1 |
0 |
0 |
0 |
A 689 B A 690 B C 691 B C 692 B A 693 B G 694 B G
695 B C 759 B U 760 B G 788 B G 789 B C 803 B A
807 B C 808 B C 809 B A 1378 B C 1772 B A 1799 B
A 1839 B A 1840 B A 1998 B A 2034 B G 2035 B G
2036 B A 2037 B A 2041 B A 2042 B A 2065 B G 2066
B U 2067 B U 2069 B G 2070 B G 2071 B C 2206 B G
2207 B U 2208 B G 2209 B C 2210 B U 2211 B C 2421
B A 2556 B C 2591 B U 2592 B A 2593 B U 2594 B C
2595 B G 3193 B
|
 |
16 |
|
1.30 |
1.30 |
177.4 |
-0.72 |
-0.72 |
8.3 |
80 |
6 |
0 |
1 |
1 |
0 |
0 |
0 |
A 689 B A 690 B C 691 B C 692 B A 693 B G 694 B G
695 B C 759 B U 760 B G 788 B G 789 B A 790 B C
803 B A 807 B C 808 B C 809 B C 1772 B C 1792 B A
1793 B A 1794 B C 1797 B G 1798 B A 1799 B A 1800
B C 1801 B A 1802 B G 1803 B A 1998 B A 2034 B G
2035 B G 2036 B A 2037 B A 2041 B A 2042 B A 2065
B G 2066 B U 2067 B C 2184 B U 2185 B G 2186 B A
2187 B A 2188 B A 2189 B A 2190 B A 2191 B C 2193
B A 2194 B C 2195 B U 2196 B C 2206 B G 2207 B U
2208 B U 2219 B C 2421 B A 2556 B C 2591 B U 2592
B A 2593 B U 2594 B C 2595 B
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program