PDBsum entry 1vko Go to PDB code:  Tunnel analysis for: 1vko calculated with MOLE 2.0 PDB id 1vko Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.22 1.42 27.6 -0.77 0.01 12.2 82 3 2 3 3 2 1 0  NAD 601 A 2 1.36 2.18 33.5 -2.29 -0.68 21.1 88 7 1 6 0 1 0 0  NAD 601 A POP 602 A 3 1.24 1.99 17.4 1.23 0.25 4.6 81 2 0 0 5 0 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.