PDBsum entry 1vkm Go to PDB code:  Pore analysis for: 1vkm calculated with MOLE 2.0 PDB id 1vkm Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 pores, coloured by radius 22 pores, coloured by radius 22 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.22 1.34 40.6 1.33 0.22 5.6 80 1 3 1 11 2 0 0  MSE 16 F MSE 62 F MSE 70 F 2 1.36 1.81 41.3 0.52 0.02 11.2 80 3 3 0 8 1 2 0  MSE 16 E 3 1.21 2.00 41.5 0.21 -0.14 12.1 80 3 3 0 7 1 1 0  MSE 16 F 4 1.56 1.56 68.5 -0.70 -0.41 18.1 81 7 4 1 5 1 0 0  MSE 62 C MSE 70 C MSE 71 C 5 1.22 1.33 104.1 -1.06 -0.24 24.5 79 11 6 2 8 2 0 0  MSE 16 F MSE 62 F 6 1.50 1.53 104.2 -1.46 -0.46 24.6 82 11 7 3 8 1 0 0  MSE 62 F MSE 70 F 7 1.40 2.89 124.3 -1.15 -0.33 23.0 80 11 9 1 8 1 2 0  MSE 16 E 8 1.60 1.64 125.0 -1.31 -0.41 24.2 81 14 12 2 8 1 0 0  MSE 62 C MSE 70 C 9 1.11 1.11 130.8 -1.35 -0.37 25.6 83 22 13 6 9 1 0 0  MSE 158 A MSE 158 B MSE 158 C EDO 602 C 10 1.49 1.72 139.4 -2.04 -0.44 29.7 80 25 6 3 7 1 0 0  MSE 62 D MSE 70 D 11 1.61 1.70 141.8 -2.21 -0.48 31.7 77 31 10 2 7 1 0 0  EDO 602 C MSE 62 D MSE 70 D 12 1.42 1.44 146.9 -2.15 -0.46 31.5 78 27 12 2 8 1 0 0  EDO 602 C MSE 62 F MSE 70 F 13 1.21 1.34 151.7 -2.02 -0.36 32.1 77 28 12 1 7 2 0 0  EDO 602 C MSE 16 F MSE 62 F 14 1.42 1.46 163.4 -2.02 -0.58 29.4 79 15 15 3 7 1 1 0  MSE 62 F MSE 70 F 15 1.25 1.39 168.2 -1.84 -0.46 29.9 77 16 15 2 6 2 1 0  MSE 16 F MSE 62 F 16 1.44 1.59 171.3 -0.92 -0.31 21.6 82 13 8 4 13 2 0 0  MSE 62 C MSE 70 C MSE 62 D MSE 70 D 17 1.31 1.30 186.9 -1.74 -0.61 25.0 79 14 16 1 5 1 3 0  MN 400 D UNL 600 D MSE 71 E EDO 603 E 18 1.52 1.48 194.0 -2.22 -0.52 31.2 79 31 18 3 6 1 1 0  MSE 62 C MSE 70 C EDO 602 C 19 1.12 1.12 204.4 -1.22 -0.39 24.0 82 25 16 7 15 2 0 0  MSE 158 A MSE 158 B MSE 158 C MSE 62 F MSE 70 F MSE 71 F 20 1.19 1.18 205.8 -1.23 -0.40 23.4 83 26 16 9 16 2 0 0  MSE 158 A MSE 158 B MSE 158 C MSE 62 D MSE 70 D 21 1.41 1.49 210.7 -1.63 -0.42 27.2 83 23 19 7 7 1 1 0  MSE 158 A MSE 158 B MSE 158 C 22 1.44 1.35 216.5 -1.23 -0.38 23.8 83 22 16 8 15 2 0 0  MSE 158 A MSE 158 B MSE 158 C MSE 62 F MSE 70 F Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.