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PDBsum entry 1vkh
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Tunnel analysis for: 1vkh calculated with  MOLE 2.0
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PDB id
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1vkh
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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3 tunnels,
coloured by tunnel radius |
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5 tunnels,
coloured by
tunnel radius
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5 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.44 |
1.53 |
19.0 |
-0.45 |
-0.13 |
9.7 |
72 |
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1 |
2 |
1 |
4 |
1 |
1 |
0 |
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MSE 137 B
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2 |
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1.20 |
1.30 |
19.1 |
0.80 |
-0.08 |
2.9 |
79 |
1 |
0 |
2 |
6 |
0 |
0 |
0 |
MSE 130 B MSE 137 B
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3 |
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1.23 |
1.30 |
22.3 |
0.48 |
-0.24 |
2.9 |
81 |
0 |
1 |
1 |
5 |
0 |
0 |
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MSE 130 B MSE 137 B
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4 |
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1.36 |
1.53 |
15.6 |
-1.34 |
-0.17 |
17.1 |
82 |
2 |
2 |
3 |
2 |
3 |
0 |
0 |
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5 |
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1.21 |
1.35 |
15.4 |
-1.41 |
-0.25 |
17.8 |
82 |
2 |
2 |
3 |
2 |
3 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program