PDBsum entry 1vkc Go to PDB code:  Pore analysis for: 1vkc calculated with MOLE 2.0 PDB id 1vkc Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.14 3.40 26.2 -1.38 -0.24 19.6 74 2 3 2 4 3 1 0  IOD 207 A 2 1.17 1.48 38.9 -0.41 0.24 12.7 75 2 2 3 5 4 1 0  IOD 202 A 3 1.15 1.14 59.7 -0.81 -0.04 19.6 75 4 7 3 6 4 0 0  IOD 202 A IOD 207 A 4 1.81 1.84 73.8 -1.54 -0.33 26.1 78 5 6 4 6 6 0 0  IOD 205 B 5 1.81 1.81 89.2 -1.39 -0.26 21.3 77 5 5 5 4 6 1 0  IOD 205 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.