PDBsum entry 1vj1 Go to PDB code:  Pore analysis for: 1vj1 calculated with MOLE 2.0 PDB id 1vj1 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.22 1.26 25.5 1.21 0.08 1.7 83 0 0 2 8 2 0 0  MSE 325 A 2 1.09 1.40 31.3 -1.38 -0.52 9.9 87 3 0 3 2 1 1 0  MSE 332 A MSE 333 A 3 1.15 1.27 35.3 0.75 0.00 2.8 75 1 0 1 7 2 1 0  MSE 325 A MSE 332 A MSE 333 A 4 1.09 1.38 59.6 -0.30 0.03 5.3 78 2 1 3 7 5 1 1  MSE 332 A MSE 333 A 5 1.18 1.29 62.8 -0.76 0.14 9.4 68 3 2 2 5 6 2 1  MSE 52 A MSE 56 A MSE 333 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.