PDBsum entry 1vh8 Go to PDB code:  Tunnel analysis for: 1vh8 calculated with MOLE 2.0 PDB id 1vh8 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.35 1.43 17.7 -0.99 -0.44 15.2 94 3 1 0 1 0 0 0   2 1.34 1.43 27.4 -0.01 -0.33 8.1 96 3 1 0 5 0 0 0  MSE 106 B 3 1.34 1.43 32.8 -0.62 -0.26 17.7 91 4 4 1 2 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.