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PDBsum entry 1vgn
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Tunnel analysis for: 1vgn calculated with  MOLE 2.0
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PDB id
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1vgn
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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3 tunnels,
coloured by tunnel radius |
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6 tunnels,
coloured by
tunnel radius
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6 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.35 |
1.35 |
20.7 |
-0.67 |
-0.31 |
9.4 |
77 |
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0 |
2 |
3 |
2 |
2 |
2 |
0 |
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2 |
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1.42 |
1.63 |
23.6 |
-0.13 |
0.04 |
3.1 |
64 |
0 |
1 |
1 |
3 |
2 |
4 |
0 |
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3 |
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1.42 |
1.63 |
24.0 |
-0.89 |
0.14 |
18.8 |
78 |
3 |
2 |
3 |
3 |
2 |
3 |
0 |
OPS 1161 B
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4 |
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1.43 |
1.64 |
30.9 |
-0.62 |
-0.33 |
16.0 |
70 |
0 |
3 |
3 |
3 |
3 |
2 |
0 |
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5 |
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1.42 |
1.63 |
36.4 |
-0.98 |
0.00 |
13.9 |
80 |
4 |
3 |
4 |
4 |
2 |
3 |
0 |
OPS 1161 A
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6 |
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1.42 |
1.63 |
36.9 |
-1.25 |
-0.40 |
18.1 |
65 |
1 |
3 |
2 |
2 |
4 |
2 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program