PDBsum entry 1vgm Go to PDB code:  Tunnel analysis for: 1vgm calculated with MOLE 2.0 PDB id 1vgm Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.36 1.36 27.2 -0.77 -0.10 17.3 81 5 1 1 3 3 0 0   2 1.62 2.19 22.9 -0.39 0.05 16.3 76 2 1 1 5 3 0 0  GOL 401 A SO4 411 A 3 1.63 1.81 31.4 -1.37 -0.15 24.2 78 5 2 0 3 3 1 0  GOL 401 A SO4 411 A 4 1.34 1.65 19.7 -1.41 -0.41 20.6 78 1 4 2 3 2 0 0   5 1.22 1.70 17.7 0.77 0.33 5.0 80 1 0 1 6 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.