PDBsum entry 1vf3 Go to PDB code:  Pore analysis for: 1vf3 calculated with MOLE 2.0 PDB id 1vf3 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.23 1.37 25.9 -0.88 -0.09 20.0 76 3 3 1 4 1 1 0   2 1.66 1.91 37.5 0.04 0.23 6.5 71 5 1 3 6 7 4 0  GDN 3600 B 3 1.51 2.09 40.5 0.07 0.09 5.7 69 4 2 2 3 8 1 0  GDN 2500 A 4 1.23 1.37 45.7 -0.65 -0.16 18.4 75 4 7 1 5 4 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.