PDBsum entry 1vcp Go to PDB code:  Tunnel analysis for: 1vcp calculated with MOLE 2.0 PDB id 1vcp Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.20 1.35 16.2 -2.18 -0.57 28.3 78 6 2 0 0 0 0 0   2 1.35 1.36 18.6 0.22 -0.04 13.2 85 4 1 1 4 1 0 0   3 1.20 1.35 24.9 -2.11 -0.57 27.9 82 6 3 1 1 0 0 0   4 1.19 1.34 27.3 -2.36 -0.64 31.7 85 5 4 1 1 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.