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PDBsum entry 1vbz

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Top Page protein dna_rna metals tunnels links
Tunnel analysis for: 1vbz calculated with MOLE 2.0 PDB id
1vbz
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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2 tunnels, coloured by tunnel radius 2 tunnels, coloured by tunnel radius 2 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.20 1.41 32.9 -0.40 -0.26 13.3 70 4 0 0 3 1 0 0  C 144 B A 145 B C 146 B
2 1.21 1.42 33.2 -0.52 -0.30 13.8 70 3 0 0 3 1 0 0  C 141 B A 142 B A 143 B C 157 B BA 202 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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