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PDBsum entry 1vby
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Pore analysis for: 1vby calculated with  MOLE 2.0
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PDB id
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1vby
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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2 pores,
coloured by radius |
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2 pores,
coloured by radius
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2 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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2.53 |
2.53 |
34.6 |
-0.40 |
-0.80 |
3.4 |
0 |
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0 |
0 |
0 |
0 |
0 |
0 |
0 |
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U 100 B C 104 B U 112 B C 113 B C 114 B C 115 B A
116 B G 117 B C 118 B C 124 B G 125 B C 126 B G
129 B C 130 B G 131 B
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2 |
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2.14 |
2.14 |
49.5 |
-1.09 |
-0.73 |
11.7 |
79 |
3 |
0 |
0 |
0 |
0 |
0 |
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C 136 B U 137 B G 138 B G 139 B G 140 B C 141 B A
142 B A 145 B C 146 B C 147 B A 148 B U 149 B C
157 B G 158 B G 159 B U 160 B G 161 B G 162 B G
164 B NA 203 B
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program