PDBsum entry 1vbm Go to PDB code:  Tunnel analysis for: 1vbm calculated with MOLE 2.0 PDB id 1vbm Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.21 2.07 24.5 0.69 0.38 9.8 74 2 0 3 5 1 1 1   2 1.66 1.93 19.1 -2.76 -0.60 27.2 79 4 4 2 1 2 0 0  SO4 2003 A YSA 3001 A 3 1.66 1.93 25.2 -2.72 -0.60 28.2 78 6 4 2 1 2 0 0  SO4 2003 A YSA 3001 A 4 1.18 1.18 31.0 -0.29 -0.12 4.0 82 0 1 3 3 2 0 0  YSA 3001 A 5 1.87 2.04 26.5 -2.56 -0.33 25.6 75 5 4 2 1 3 0 0  SO4 2001 B YSA 3002 B 6 1.35 1.78 21.8 0.80 0.44 10.2 69 2 0 2 5 2 1 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.