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PDBsum entry 1vbi
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Tunnel analysis for: 1vbi calculated with MOLE 2.0 PDB id
1vbi
Tunnels calculated on whole structure Tunnels calculated excluding ligands
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2 tunnels, coloured by tunnel radius 10 tunnels, coloured by tunnel radius 10 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.91 1.93 20.4 -0.76 -0.12 17.6 86 3 1 1 3 1 1 0  NAD 401 A EDO 405 A
2 1.91 1.93 22.5 -1.62 0.01 25.9 80 5 2 0 2 3 1 0  NAD 401 A SO4 406 A
3 1.66 1.70 22.7 -0.58 -0.21 14.5 91 3 0 1 5 0 1 0  NAD 401 A EDO 405 A
4 1.63 1.68 24.8 -1.29 -0.09 21.4 83 5 2 0 3 2 1 0  NAD 401 A SO4 406 A
5 1.91 1.93 25.9 -1.22 0.10 21.2 78 4 2 0 3 3 1 0  NAD 401 A SO4 406 A
6 1.64 1.68 28.2 -0.97 -0.02 17.6 81 4 2 0 4 2 1 0  NAD 401 A SO4 406 A
7 1.64 1.80 39.1 -1.08 -0.24 23.8 87 5 4 0 6 1 1 0  NAD 401 A EDO 405 A
8 1.62 1.67 41.4 -0.84 -0.26 21.3 90 5 4 0 8 0 1 0  NAD 401 A EDO 405 A
9 1.38 2.95 43.0 -1.71 -0.26 29.9 83 6 3 0 5 2 1 0  NAD 401 A EDO 405 A
10 1.43 2.44 45.4 -1.55 -0.31 27.4 86 6 3 0 7 1 1 0  NAD 401 A EDO 405 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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