PDBsum entry 1vbf Go to PDB code:  Tunnel analysis for: 1vbf calculated with MOLE 2.0 PDB id 1vbf Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 13 tunnels, coloured by tunnel radius 13 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.25 3.19 20.6 0.02 0.12 6.6 77 1 1 0 5 3 0 0   2 1.28 3.49 20.8 0.11 0.14 6.0 77 1 1 0 5 3 0 0   3 1.24 3.15 27.3 0.71 0.28 4.0 74 1 0 0 5 3 1 0  MSE 104 B 4 1.26 3.48 27.5 0.56 0.22 3.9 74 1 0 0 5 3 1 0  MSE 104 B 5 1.24 3.14 34.1 -0.62 -0.12 4.5 72 2 0 1 3 6 0 0  MSE 192 B 6 1.30 3.50 34.4 -0.62 -0.12 4.1 72 2 0 1 3 6 0 0  MSE 192 B 7 1.17 2.99 24.0 0.23 0.15 6.5 77 1 1 0 5 3 0 0   8 1.21 2.98 24.5 1.04 0.37 3.6 75 1 0 0 5 3 0 0  MSE 104 A 9 1.21 2.98 30.2 0.24 0.08 3.2 78 1 0 2 5 4 0 0  MSE 192 A 10 1.42 2.19 17.8 -0.18 0.03 6.1 80 1 1 0 4 3 0 0   11 1.42 2.11 21.8 -0.47 -0.19 3.2 78 1 0 1 2 4 0 0  MSE 192 D 12 1.42 2.11 22.0 0.79 0.36 3.0 78 1 0 0 4 3 0 0  MSE 104 D 13 1.31 1.31 30.3 0.40 0.09 5.0 82 1 1 1 6 3 0 0  MSE 104 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.