PDBsum entry 1vbe Go to PDB code:  Tunnel analysis for: 1vbe calculated with MOLE 2.0 PDB id 1vbe Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.17 1.17 22.4 -1.08 -0.58 11.5 90 1 2 2 3 0 1 0   2 1.07 1.07 29.7 -0.67 -0.55 6.2 90 1 1 3 5 0 2 0   3 1.23 1.20 53.6 -0.48 -0.36 10.1 88 2 3 3 7 1 1 0   4 1.19 1.54 15.2 -0.96 -0.17 17.8 68 2 2 0 4 0 2 0   5 1.27 1.28 20.2 -0.96 -0.54 4.0 82 0 1 4 2 2 1 0   6 1.54 1.59 15.4 -1.20 -0.44 11.3 83 1 2 3 1 2 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.