PDBsum entry 1vbd Go to PDB code:  Tunnel analysis for: 1vbd calculated with MOLE 2.0 PDB id 1vbd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.33 1.35 33.8 -0.72 -0.38 15.6 75 4 2 0 4 3 1 0   2 1.34 1.36 41.8 -0.21 -0.26 13.3 81 3 3 2 4 4 0 0   3 1.22 1.49 47.3 -0.64 -0.38 13.1 85 3 4 3 2 3 1 1   4 1.33 1.35 57.7 0.24 0.10 9.8 76 3 2 0 8 8 2 0  J78 500 1 5 1.12 3.17 28.2 0.04 -0.23 5.9 85 2 0 3 6 1 0 1   6 1.20 3.33 32.4 0.36 -0.01 3.5 84 2 0 3 9 1 0 1   7 1.55 1.72 18.2 0.35 -0.06 8.3 89 1 0 2 4 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.