PDBsum entry 1vbb

Tunnel analysis for: 1vbb calculated with

MOLE 2.0

PDB id

1vbb

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

2 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.21

1.42

20.9

-1.05

-0.59

10.7

93

1

2

2

2

0

1

0

2

1.34

1.34

39.2

-1.05

-0.38

19.2

82

5

3

1

3

2

1

0

J80 500 1

3

1.34

1.34

42.3

-0.05

-0.14

11.9

76

3

3

1

6

5

0

0

J80 500 1

4

1.34

1.34

44.3

-0.08

-0.14

12.1

73

3

2

1

4

6

2

0

J80 500 1

5

1.35

1.35

67.7

0.70

0.33

8.5

77

3

2

1

11

8

2

0

J80 500 1

6

1.24

1.43

20.3

0.73

0.46

6.7

74

2

1

0

5

2

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.