PDBsum entry 1vba Go to PDB code:  Tunnel analysis for: 1vba calculated with MOLE 2.0 PDB id 1vba Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.30 1.35 35.6 -0.67 -0.33 16.0 82 5 3 1 3 2 1 0   2 1.29 1.35 35.8 -0.38 -0.31 13.7 82 4 2 1 6 2 0 0   3 1.28 1.34 43.1 0.18 -0.06 11.0 75 3 3 1 5 5 0 0  J78 500 1 4 1.30 1.35 61.5 0.79 0.33 6.5 76 3 1 1 11 8 2 0  J78 500 1 Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.