PDBsum entry 1v6j Go to PDB code:  Tunnel analysis for: 1v6j calculated with MOLE 2.0 PDB id 1v6j Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.09 2.15 39.8 0.24 -0.11 7.2 86 0 2 5 8 3 0 0   2 1.11 2.11 41.0 0.43 -0.01 6.0 79 1 1 3 8 5 0 0   3 1.11 2.22 42.7 0.23 -0.21 6.9 88 0 2 5 8 3 0 0   4 1.10 2.18 49.5 0.18 -0.16 5.0 87 2 2 8 9 5 0 0   5 1.10 2.16 72.9 0.29 0.02 5.5 86 0 2 9 12 7 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.