 |
PDBsum entry 1v6a
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 1v6a calculated with  MOLE 2.0
|
PDB id
|
|
|
|
1v6a
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
5 tunnels,
coloured by tunnel radius |
|
6 tunnels,
coloured by
tunnel radius
|
6 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.20 |
1.20 |
22.4 |
0.87 |
-0.06 |
2.5 |
82 |
|
1 |
0 |
1 |
5 |
3 |
0 |
0 |
|
|
 |
|
2 |
 |
1.18 |
1.25 |
35.9 |
1.17 |
0.42 |
6.7 |
93 |
2 |
1 |
4 |
8 |
1 |
0 |
0 |
|
|
3 |
 |
1.18 |
1.25 |
39.9 |
0.93 |
0.37 |
7.0 |
93 |
3 |
0 |
4 |
9 |
1 |
0 |
0 |
GLC 1 D GLC 2 D
|
|
4 |
 |
1.26 |
1.26 |
18.8 |
-0.81 |
-0.27 |
17.6 |
91 |
2 |
2 |
3 |
4 |
1 |
0 |
0 |
|
|
5 |
 |
1.08 |
1.73 |
34.1 |
0.96 |
0.24 |
8.0 |
93 |
2 |
1 |
4 |
9 |
1 |
0 |
0 |
|
 |
6 |
 |
1.13 |
1.76 |
35.4 |
0.78 |
0.12 |
6.7 |
92 |
3 |
0 |
4 |
9 |
1 |
0 |
0 |
GLC 1 F GLC 2 F
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program