PDBsum entry 1v43

Tunnel analysis for: 1v43 calculated with

MOLE 2.0

PDB id

1v43

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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without HETATM:

6 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.25

1.47

27.3

1.81

0.62

7.6

75

2

1

2

10

1

1

0

2

1.26

1.47

27.4

1.84

0.60

7.5

78

2

1

2

10

0

1

0

3

1.08

2.26

32.4

2.01

0.62

2.4

80

2

0

2

12

1

2

0

4

1.09

2.40

35.9

2.37

0.71

0.8

85

0

0

3

12

0

2

0

5

1.07

2.43

36.3

2.17

0.74

4.3

79

1

0

1

12

2

3

0

6

1.04

2.11

39.5

1.86

0.65

3.0

76

2

0

1

13

3

4

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.