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PDBsum entry 1v1m
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Tunnel analysis for: 1v1m calculated with  MOLE 2.0
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PDB id
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1v1m
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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3 tunnels,
coloured by tunnel radius |
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6 tunnels,
coloured by
tunnel radius
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6 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.70 |
1.83 |
16.2 |
-1.13 |
-0.27 |
6.8 |
72 |
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0 |
1 |
1 |
2 |
2 |
1 |
0 |
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GOL 2344 B
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2 |
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1.69 |
1.83 |
18.3 |
-0.65 |
-0.09 |
2.1 |
75 |
0 |
0 |
3 |
2 |
2 |
2 |
0 |
GOL 2344 B
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3 |
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1.31 |
1.49 |
17.7 |
-1.49 |
-0.18 |
23.0 |
85 |
3 |
2 |
1 |
4 |
0 |
0 |
0 |
TPP 1401 A MN 1405 A
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4 |
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1.31 |
1.49 |
18.0 |
-0.99 |
-0.40 |
15.8 |
86 |
1 |
3 |
2 |
3 |
0 |
0 |
0 |
TPP 1401 A MN 1405 A
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5 |
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1.18 |
1.37 |
17.3 |
-2.07 |
-0.14 |
21.1 |
79 |
3 |
2 |
1 |
3 |
1 |
0 |
0 |
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6 |
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1.18 |
1.38 |
17.8 |
-1.51 |
-0.19 |
17.0 |
81 |
1 |
2 |
1 |
3 |
1 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program