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PDBsum entry 1v15

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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 1v15 calculated with MOLE 2.0 PDB id
1v15
Pores calculated on whole structure Pores calculated excluding ligands

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5 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.99 2.13 27.0 -0.22 0.05 16.7 78 1 2 0 5 1 0 0  
2 2.44 2.44 74.1 -0.50 -0.80 4.5 102 1 0 2 0 0 0 0  DC 2 E DG 3 E DA 4 E DT 5 E ZN 1009 E DC 10 F DG
11 F DA 12 F DG 3 G ZN 1009 G DC 10 H DG 11 H DA
12 H DC 2 I DG 3 I DT 5 I ZN 1009 I DC 10 J DG 11
J DA 12 J DT 13 J DC 14 J DG 3 K ZN 1009 K DC 10
L DG 11 L DA 12 L
3 1.28 1.47 78.9 -1.11 -0.29 17.6 84 5 3 3 3 0 3 0  DA 4 E
4 2.02 2.02 94.4 -1.69 -0.50 19.5 82 7 4 5 2 1 2 0  DA 4 G DT 5 G DC 2 I DG 3 I
5 1.29 1.46 96.6 -1.15 -0.38 16.6 85 5 4 4 3 0 3 0  DG 15 F DC 16 F
6 2.21 2.21 120.3 -0.52 -0.70 4.7 92 2 0 4 2 0 1 0  DC 2 E DG 3 E DT 5 E ZN 1009 E DC 10 F DG 11 F DA
12 F DG 3 G DA 4 G DT 5 G ZN 1009 G DC 10 H DG 11
H DA 12 H DC 2 I DG 3 I ZN 1009 I DC 10 J DG 11 J
DA 12 J DT 13 J DC 14 J DG 3 K DA 4 K ZN 1009 K
DC 10 L DG 11 L DA 12 L DC 16 L

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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