 |
PDBsum entry 1v0e
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 1v0e calculated with MOLE 2.0
|
PDB id
|
|
|
|
1v0e
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Tunnels calculated on whole structure |
 |
Tunnels calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
35 tunnels,
coloured by tunnel radius |
 |
34 tunnels,
coloured by
tunnel radius
|
34 tunnels,
coloured as in list below
|
|
|
 |
 |
 |
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.25 |
3.17 |
47.8 |
0.48 |
0.17 |
13.5 |
84 |
 |
4 |
3 |
3 |
6 |
4 |
1 |
0 |
 |
|
 |
 |
2 |
 |
1.30 |
3.22 |
48.2 |
0.73 |
0.19 |
11.9 |
82 |
4 |
3 |
2 |
6 |
4 |
1 |
0 |
|
 |
3 |
 |
1.24 |
2.99 |
51.5 |
0.63 |
0.16 |
12.1 |
82 |
4 |
3 |
2 |
6 |
4 |
1 |
0 |
|
 |
4 |
 |
1.21 |
3.05 |
60.5 |
0.04 |
0.07 |
12.7 |
81 |
3 |
4 |
5 |
7 |
7 |
1 |
0 |
|
 |
5 |
 |
1.32 |
2.98 |
59.7 |
-0.16 |
0.04 |
16.3 |
80 |
5 |
6 |
3 |
7 |
7 |
1 |
0 |
|
 |
6 |
 |
1.29 |
2.98 |
60.7 |
0.26 |
0.15 |
11.3 |
82 |
4 |
4 |
5 |
7 |
7 |
1 |
0 |
|
 |
7 |
 |
1.25 |
3.06 |
64.9 |
0.19 |
0.14 |
12.4 |
82 |
4 |
4 |
6 |
7 |
7 |
1 |
0 |
|
 |
8 |
 |
1.32 |
3.14 |
72.7 |
-0.55 |
0.13 |
17.8 |
79 |
7 |
7 |
3 |
9 |
6 |
3 |
0 |
|
 |
9 |
 |
1.64 |
2.09 |
38.2 |
-0.76 |
-0.27 |
18.1 |
88 |
4 |
3 |
3 |
5 |
1 |
1 |
0 |
|
 |
10 |
 |
1.65 |
2.09 |
40.9 |
-0.05 |
-0.12 |
14.3 |
89 |
4 |
3 |
3 |
7 |
1 |
1 |
0 |
|
 |
11 |
 |
1.69 |
1.88 |
41.5 |
-0.75 |
-0.26 |
17.9 |
88 |
4 |
4 |
3 |
5 |
1 |
1 |
0 |
|
 |
12 |
 |
1.61 |
1.86 |
43.7 |
-0.40 |
-0.20 |
16.2 |
89 |
4 |
4 |
3 |
7 |
1 |
1 |
0 |
|
 |
13 |
 |
1.65 |
2.09 |
44.9 |
0.01 |
-0.13 |
13.5 |
89 |
4 |
3 |
3 |
7 |
1 |
1 |
0 |
|
 |
14 |
 |
1.64 |
2.07 |
45.5 |
-0.23 |
-0.21 |
14.2 |
89 |
4 |
3 |
3 |
7 |
1 |
1 |
0 |
|
 |
15 |
 |
1.47 |
3.09 |
52.9 |
-0.98 |
-0.24 |
16.5 |
85 |
4 |
4 |
6 |
6 |
4 |
1 |
0 |
|
 |
16 |
 |
1.51 |
2.85 |
53.0 |
-1.00 |
-0.23 |
17.2 |
86 |
4 |
4 |
7 |
7 |
4 |
1 |
0 |
|
 |
17 |
 |
1.47 |
3.21 |
53.2 |
-0.41 |
-0.14 |
13.7 |
86 |
3 |
4 |
6 |
8 |
4 |
1 |
0 |
|
 |
18 |
 |
1.39 |
3.15 |
53.8 |
-0.43 |
-0.16 |
13.2 |
86 |
3 |
4 |
6 |
8 |
4 |
1 |
0 |
|
 |
19 |
 |
1.55 |
2.25 |
55.2 |
-0.57 |
-0.14 |
15.0 |
87 |
4 |
4 |
7 |
9 |
4 |
1 |
0 |
|
 |
20 |
 |
1.52 |
3.35 |
55.6 |
-0.36 |
-0.13 |
13.8 |
86 |
4 |
4 |
6 |
8 |
4 |
1 |
0 |
|
 |
21 |
 |
1.60 |
1.80 |
63.2 |
-1.41 |
-0.16 |
21.5 |
82 |
7 |
8 |
6 |
8 |
3 |
3 |
0 |
|
 |
22 |
 |
1.62 |
1.77 |
63.5 |
-1.39 |
-0.14 |
21.7 |
82 |
7 |
8 |
6 |
8 |
3 |
3 |
0 |
|
 |
23 |
 |
1.24 |
1.25 |
70.1 |
-1.62 |
-0.30 |
20.4 |
78 |
6 |
8 |
2 |
7 |
4 |
3 |
0 |
|
 |
24 |
 |
1.24 |
1.27 |
70.4 |
-1.48 |
-0.29 |
20.1 |
78 |
6 |
8 |
2 |
7 |
4 |
3 |
0 |
|
 |
25 |
 |
1.37 |
3.18 |
73.5 |
-2.30 |
-0.40 |
27.4 |
81 |
8 |
13 |
5 |
5 |
4 |
3 |
0 |
|
 |
26 |
 |
1.38 |
3.25 |
73.8 |
-2.16 |
-0.36 |
26.2 |
81 |
8 |
13 |
5 |
5 |
4 |
3 |
0 |
|
 |
27 |
 |
1.65 |
1.84 |
85.8 |
-2.33 |
-0.39 |
26.8 |
80 |
8 |
14 |
5 |
5 |
5 |
3 |
0 |
|
 |
28 |
 |
1.47 |
1.53 |
18.6 |
-0.62 |
0.45 |
15.8 |
67 |
1 |
1 |
0 |
3 |
2 |
1 |
0 |
|
 |
29 |
 |
1.26 |
1.26 |
28.3 |
-1.14 |
-0.06 |
19.2 |
72 |
3 |
3 |
0 |
3 |
2 |
1 |
0 |
|
 |
30 |
 |
1.20 |
1.35 |
27.6 |
-0.72 |
0.13 |
11.6 |
72 |
1 |
2 |
0 |
3 |
2 |
1 |
0 |
|
 |
31 |
 |
1.25 |
1.25 |
28.0 |
-1.12 |
0.07 |
19.7 |
72 |
3 |
3 |
0 |
3 |
2 |
1 |
0 |
|
 |
32 |
 |
1.18 |
1.24 |
20.4 |
-2.22 |
-0.74 |
14.2 |
81 |
2 |
1 |
3 |
0 |
0 |
2 |
0 |
|
 |
33 |
 |
1.18 |
1.24 |
21.9 |
-1.17 |
-0.45 |
6.9 |
84 |
1 |
0 |
4 |
2 |
0 |
2 |
0 |
|
 |
34 |
 |
1.43 |
1.46 |
17.3 |
-1.06 |
-0.22 |
20.6 |
78 |
1 |
1 |
1 |
2 |
2 |
1 |
1 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |