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PDBsum entry 1uux

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Chelatase PDB id
1uux
Contents
Protein chain
161 a.a. *
Ligands
MTE
PPI
IMD
FMT
Metals
CU1
Waters ×155
* Residue conservation analysis

References listed in PDB file
Key reference
Title Structure of the molybdopterin-Bound cnx1g domain links molybdenum and copper metabolism.
Authors J.Kuper, A.Llamas, H.J.Hecht, R.R.Mendel, G.Schwarz.
Ref. Nature, 2004, 430, 803-806. [DOI no: 10.1038/nature02681]
PubMed id 15306815
Abstract
The molybdenum cofactor is part of the active site of all molybdenum-dependent enzymes, except nitrogenase. The molybdenum cofactor consists of molybdopterin, a phosphorylated pyranopterin, with an ene-dithiolate coordinating molybdenum. The same pyranopterin-based cofactor is involved in metal coordination of the homologous tungsten-containing enzymes found in archea. The molybdenum cofactor is synthesized by a highly conserved biosynthetic pathway. In plants, the multidomain protein Cnx1 catalyses the insertion of molybdenum into molybdopterin. The Cnx1 G domain (Cnx1G), whose crystal structure has been determined in its apo form, binds molybdopterin with high affinity and participates in the catalysis of molybdenum insertion. Here we present two high-resolution crystal structures of Cnx1G in complex with molybdopterin and with adenylated molybdopterin (molybdopterin-AMP), a mechanistically important intermediate. Molybdopterin-AMP is the reaction product of Cnx1G and is subsequently processed in a magnesium-dependent reaction by the amino-terminal E domain of Cnx1 to yield active molybdenum cofactor. The unexpected identification of copper bound to the molybdopterin dithiolate sulphurs in both structures, coupled with the observed copper inhibition of Cnx1G activity, provides a molecular link between molybdenum and copper metabolism.
Figure 1.
Figure 1: Structure of the Cnx1G -MPT and Ser583Ala -MPT -AMP complexes. a, b, Ribbon representation of Cnx1G (a) and Ser583Ala (b). -Helices and -strands are shown in green and orange, respectively. Bound MPT and MPT -AMP are shown in ball-and-stick notation and are covered by the 2F[o] -F[c] electron density contoured at 1.0 . The difference density (F[o] -F[c]) is shown in red (3.5 ). c, d, Close-up views of the bound MPT (c) and AMP (d) regions in the Ser583Ala structure. e, f, Molecular surface of Ser583Ala with bound MPT -AMP showing, respectively, residues important for MPT binding (red) and catalysis12,14 (blue), and the electrostatic surface potential with 11 kT as borders for electropositive (blue) and negative (red) regions calculated with SYBIL and GRASP30. The catalytically important residues Asp 515 and Asp 548 are highlighted. The position of Mg2+ found in the homologous MoeA^22 domain is superimposed.
Figure 4.
Figure 4: Hypothetical mechanism of the molybdenum insertion reaction. The mechanism of copper chelation is unknown. Cnx1G adenylates Cu -MPT, a reaction that is thought to be cation (M2+) dependent. Cnx1E subsequently cleaves the Cu -MPT -AMP complex to activate and to transfer the molybdenum atom to MPT. The function of copper is seen in the protection of the reactive MPT dithiolate.
The above figures are reprinted by permission from Macmillan Publishers Ltd: Nature (2004, 430, 803-806) copyright 2004.
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