PDBsum entry 1uuj Go to PDB code:  Tunnel analysis for: 1uuj calculated with MOLE 2.0 PDB id 1uuj Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.18 1.18 22.5 -1.75 -0.80 21.4 84 1 4 2 1 1 0 0   2 1.18 1.35 15.2 -0.46 -0.05 11.2 69 1 0 1 3 2 0 0  MSE 39 B 3 1.18 1.35 15.6 0.35 0.14 8.6 64 2 0 0 4 2 0 0  MSE 39 B 4 1.19 1.35 17.0 -1.09 -0.07 18.3 71 2 2 0 2 2 0 0  MSE 39 B 5 1.56 2.18 18.8 -2.17 -0.47 27.6 83 2 2 1 2 2 0 0  MSE 39 B 6 1.14 1.36 16.4 -1.38 -0.35 21.6 69 2 3 0 2 1 0 0   7 1.15 1.36 16.6 -1.44 -0.36 22.1 69 2 3 0 2 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.