PDBsum entry 1tkd Go to PDB code:  Pore analysis for: 1tkd calculated with MOLE 2.0 PDB id 1tkd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.35 2.38 28.3 -3.17 -0.64 39.3 76 3 1 0 0 0 1 0  DG 811 P DG 812 P DC 813 P DC 814 P DA 815 P DG 816 P DT 817 P DT 856 T DC 859 T DC 861 T DT 862 T 2 1.89 2.13 41.0 -1.62 -0.56 22.1 77 4 2 0 3 0 1 0  DG 816 P DT 817 P DC 819 P DC 820 P DA 860 T DC 861 T DT 862 T DG 863 T DG 864 T 3 2.16 2.34 45.4 -1.86 -0.17 30.0 75 7 5 1 2 3 1 0  SO4 904 A DG 812 P 4 1.54 1.95 63.5 -2.60 -0.68 33.3 83 6 4 0 1 0 0 0  D3T 823 A DC 820 P DA 821 P DOC 822 P DC 853 T DA 854 T DT 856 T 5 1.54 1.96 75.0 -2.45 -0.71 29.7 84 6 5 1 1 0 1 0  D3T 823 A DC 820 P DA 821 P DOC 822 P Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.