PDBsum entry 1thy Go to PDB code:  Tunnel analysis for: 1thy calculated with MOLE 2.0 PDB id 1thy Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.55 1.54 29.9 0.77 0.57 10.6 65 2 2 2 7 6 1 1  UMP 317 A 2 1.54 1.54 32.9 0.41 0.50 11.5 72 2 3 2 6 5 0 1  UMP 317 A 3 1.54 1.54 34.6 0.08 0.47 7.2 63 2 1 2 8 6 0 1   4 1.54 1.54 35.2 -0.38 0.27 15.5 73 4 3 3 4 5 0 1  UMP 317 A 5 1.16 1.35 24.7 0.82 -0.02 6.6 71 0 1 0 7 1 3 0   6 1.21 1.21 17.0 -1.37 -0.17 8.6 81 2 0 2 1 1 0 0   7 1.10 1.30 17.9 -2.05 -0.15 27.7 65 3 2 0 0 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.