spacer
spacer

PDBsum entry 1thb

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 1thb calculated with MOLE 2.0 PDB id
1thb
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
2 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.20 1.57 29.7 -1.68 -0.32 18.9 78 8 1 1 1 1 1 1  IHP 315 B
2 1.25 1.24 34.6 0.94 0.44 13.9 76 5 0 1 11 2 0 0  HEM 147 D
3 2.82 4.28 40.6 -1.24 -0.24 19.9 78 4 2 2 8 3 3 0  
4 1.12 1.12 52.9 0.29 0.30 12.7 81 6 0 4 11 5 0 0  HEM 147 B IHP 315 B
5 1.28 1.33 54.8 -0.86 -0.19 13.7 79 5 2 2 8 4 4 1  
6 1.19 1.17 59.3 0.21 0.17 11.7 76 8 1 1 11 5 1 1  HEM 147 B
7 1.20 1.21 59.5 0.18 0.08 10.3 77 5 1 2 13 6 3 0  HEM 147 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer