spacer
spacer

PDBsum entry 1t7c

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 1t7c calculated with MOLE 2.0 PDB id
1t7c
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
7 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.49 1.53 15.8 -0.61 -0.46 10.5 62 2 0 0 1 2 0 0  
2 1.44 1.48 16.9 -0.69 -0.50 10.6 71 2 0 1 1 2 0 0  
3 1.19 1.41 17.3 0.44 0.12 9.8 79 0 3 2 3 2 0 1  
4 1.20 1.42 18.6 -0.05 0.03 15.2 78 2 3 1 3 2 0 1  
5 1.20 1.41 23.5 0.61 0.26 13.2 77 2 2 0 4 2 0 1  
6 1.50 1.53 17.0 -0.73 -0.51 11.0 71 2 0 1 1 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer