PDBsum entry 1t5o

Tunnel analysis for: 1t5o calculated with

MOLE 2.0

PDB id

1t5o

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

7 tunnels, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.15

1.67

34.2

-0.69

-0.20

16.5

82

4

2

2

9

0

1

1

2

1.15

1.67

36.4

-0.81

-0.32

16.7

85

5

2

1

7

1

0

1

3

1.16

1.57

40.1

-0.16

-0.39

8.4

89

3

3

2

9

0

1

1

4

1.16

1.57

40.6

-0.34

-0.34

8.6

85

3

2

2

9

1

2

1

5

1.60

1.65

21.3

-1.16

-0.50

16.3

75

1

4

1

2

2

2

0

6

1.61

1.65

27.8

-1.68

-0.56

18.7

76

3

4

1

2

2

1

0

7

1.36

1.52

40.0

-2.13

-0.43

28.7

82

8

4

1

1

1

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.