PDBsum entry 1so3

Tunnel analysis for: 1so3 calculated with

MOLE 2.0

PDB id

1so3

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

0 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.38

1.57

38.1

-0.50

-0.33

15.5

88

3

2

1

9

0

0

2

TX4 1301 B

2

1.37

1.59

38.7

-0.59

-0.29

17.6

89

3

2

1

9

0

0

2

TX4 2301 A

3

1.38

1.57

42.3

-0.19

-0.23

14.3

89

3

2

1

11

0

0

2

TX4 1301 B

4

1.37

1.59

42.8

-0.26

-0.21

15.8

90

3

2

1

11

0

0

2

TX4 2301 A

5

1.37

1.57

50.7

-0.52

-0.37

15.1

87

1

6

1

12

2

0

2

TX4 1301 B

6

1.37

1.57

54.8

-0.19

-0.29

13.5

87

1

6

1

14

2

0

2

TX4 1301 B

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.