PDBsum entry 1sdl

Pore analysis for: 1sdl calculated with

MOLE 2.0

PDB id

1sdl

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

7 pores, coloured by radius

7 pores, coloured by radius

7 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.13

1.60

26.2

1.21

0.29

4.4

85

2

1

1

7

1

2

0

2

1.20

1.21

38.5

-1.66

-0.33

19.6

78

4

2

1

3

2

5

0

3

1.72

2.11

50.2

-1.27

-0.23

19.8

78

6

4

1

4

2

5

1

4

1.25

1.23

53.9

-1.57

-0.09

22.8

71

7

6

0

5

4

5

1

5

1.40

1.40

89.6

-1.11

-0.18

18.9

77

8

8

2

9

4

6

1

6

1.27

1.28

92.5

-1.34

-0.19

21.3

75

8

9

1

10

4

5

1

7

1.39

1.41

111.2

-1.77

-0.30

23.4

79

12

7

2

5

2

4

1

TMM 300 D

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.