PDBsum entry 1s3m Go to PDB code:  Tunnel analysis for: 1s3m calculated with MOLE 2.0 PDB id 1s3m Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.23 1.47 23.4 -2.00 -0.39 29.2 81 4 2 0 1 1 0 0   2 1.23 1.46 23.5 -2.01 -0.41 28.9 81 4 2 0 1 1 0 0   3 1.18 1.41 23.9 -1.54 -0.23 27.5 83 5 2 0 1 2 0 0   4 1.18 1.41 24.0 -1.57 -0.25 27.2 83 5 2 0 1 2 0 0   5 1.19 1.41 24.0 -1.54 -0.23 27.5 83 5 2 0 1 2 0 0   6 1.19 1.41 24.0 -1.57 -0.25 27.2 83 5 2 0 1 2 0 0   7 1.23 1.47 24.5 -2.09 -0.35 31.2 83 6 2 0 1 1 0 0   8 1.22 1.47 24.5 -2.01 -0.34 30.6 83 6 2 0 1 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.