PDBsum entry 1s3b Go to PDB code:  Tunnel analysis for: 1s3b calculated with MOLE 2.0 PDB id 1s3b Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.58 1.58 59.4 -0.62 -0.14 9.0 76 3 2 1 9 6 2 0  FAD 600 A RMA 601 A 2 1.11 1.26 18.3 -0.98 -0.24 12.1 80 3 1 1 3 2 0 0   3 1.34 1.34 15.6 -0.94 -0.29 8.3 76 1 2 2 2 1 1 0   4 1.56 1.77 25.5 -0.68 0.47 8.6 59 2 0 2 2 6 1 0   5 1.54 1.75 25.8 -0.67 0.48 9.1 59 2 0 2 2 6 1 0   6 1.87 1.98 19.6 -0.96 0.01 9.1 75 1 1 1 1 2 0 0   7 1.30 1.65 22.2 -0.73 0.03 9.4 77 2 1 1 1 2 0 0   8 1.83 2.01 19.8 -0.88 0.00 8.7 75 1 1 1 1 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.