PDBsum entry 1ryp Go to PDB code:  Pore analysis for: 1ryp calculated with MOLE 2.0 PDB id 1ryp Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 0.93 1.12 39.6 -1.89 -0.43 24.9 80 6 3 3 2 1 1 0   2 1.52 1.58 68.7 -1.26 -0.47 18.2 82 3 3 4 4 1 1 0   3 1.94 2.01 70.6 -1.94 -0.53 24.2 85 8 6 6 3 0 2 0   4 1.66 3.95 82.2 -2.50 -0.44 28.1 80 9 9 5 4 5 0 0   5 1.56 2.81 85.3 -2.20 -0.37 23.1 79 9 9 7 5 5 1 0   6 1.70 1.94 86.1 -1.72 -0.31 20.4 78 8 8 7 7 6 1 1   7 1.86 1.85 86.8 -1.96 -0.40 26.2 80 8 5 4 3 1 3 0   8 1.60 2.56 98.9 -2.55 -0.69 34.5 81 11 13 3 2 2 2 0  MG 2 E 9 1.63 2.81 101.2 -1.60 -0.31 22.3 76 10 10 8 7 7 2 1   10 1.85 2.06 113.5 -2.39 -0.46 27.4 82 13 10 10 5 6 1 0   11 1.66 2.78 112.9 -2.39 -0.46 27.4 79 13 13 8 3 6 1 0   12 1.57 1.77 122.9 -1.82 -0.29 23.1 80 11 9 6 8 7 0 0   13 1.29 1.27 132.3 -1.39 -0.18 16.2 78 9 4 8 10 11 1 0   14 1.25 1.24 151.0 -1.39 -0.22 18.2 78 10 7 10 9 11 2 0   15 1.30 1.82 160.7 -1.47 -0.37 19.8 80 12 10 10 10 10 3 0   16 1.68 3.00 162.0 -1.56 -0.26 21.3 78 17 10 12 12 10 3 0   17 1.27 1.27 167.1 -2.42 -0.58 25.9 83 18 16 14 4 4 4 0   18 1.47 1.68 171.1 -1.99 -0.41 26.2 82 18 16 8 7 6 1 0   19 1.54 2.99 165.9 -1.90 -0.36 19.0 83 17 6 13 7 8 1 0   20 1.66 3.00 181.3 -2.30 -0.44 24.9 82 17 10 13 7 9 1 0   21 1.27 1.27 184.2 -2.14 -0.48 23.7 81 19 14 13 8 8 4 0   22 1.54 2.98 205.8 -2.15 -0.41 22.5 81 23 12 15 8 9 2 0   23 1.67 3.00 211.6 -2.49 -0.46 26.7 81 24 13 13 6 9 1 0   24 1.86 2.04 224.4 -2.43 -0.51 26.3 83 22 12 15 5 9 1 0   25 1.55 1.74 248.6 -2.35 -0.44 25.6 81 25 14 14 9 10 2 0   26 1.51 2.99 248.9 -2.38 -0.47 25.0 82 28 15 17 6 9 2 0   27 1.30 1.40 256.7 -1.32 -0.24 15.2 80 19 6 19 14 15 3 0   28 1.90 2.23 254.7 -2.63 -0.51 28.4 81 29 16 15 5 9 1 0   29 1.31 1.32 296.6 -1.61 -0.28 18.4 79 25 12 21 15 16 4 0   30 1.25 1.54 339.7 -1.77 -0.34 20.2 80 30 15 23 13 16 4 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.