PDBsum entry 1rv6

Tunnel analysis for: 1rv6 calculated with

MOLE 2.0

PDB id

1rv6

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

5 tunnels, coloured by tunnel radius

5 tunnels, coloured by tunnel radius

5 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.41

1.50

15.6

-0.94

-0.25

12.3

69

1

1

1

1

2

1

1

2

1.36

1.36

15.8

-0.83

-0.36

11.2

65

0

2

1

0

2

1

1

3

1.34

1.37

20.4

-0.62

0.02

15.0

66

2

2

0

3

2

1

1

4

1.58

1.61

19.1

-0.46

-0.37

7.4

72

0

2

1

1

1

1

1

5

1.18

3.75

15.3

-1.25

-0.26

22.6

92

2

1

1

3

0

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.