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PDBsum entry 1rv0

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 1rv0 calculated with MOLE 2.0 PDB id
1rv0
Pores calculated on whole structure Pores calculated excluding ligands

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16 pores, coloured by radius 16 pores, coloured by radius 16 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.29 2.45 28.2 -2.15 -0.60 25.7 84 5 2 3 2 0 1 0  
2 1.34 1.33 38.1 0.15 -0.30 4.1 102 1 0 6 3 1 1 0  
3 2.32 3.36 41.4 -2.32 -0.48 30.8 81 5 8 4 4 2 0 0  
4 2.58 3.54 47.8 -2.13 -0.66 27.3 85 5 10 2 2 1 0 0  
5 2.43 3.52 48.3 -2.26 -0.53 28.3 82 7 9 4 4 1 0 0  
6 2.32 3.37 51.5 -2.30 -0.68 28.8 85 5 11 2 2 1 0 0  
7 2.43 3.52 58.5 -2.34 -0.68 28.4 85 7 12 2 2 0 0 0  
8 1.58 1.58 68.9 -2.23 -0.48 29.5 79 8 6 3 3 3 1 0  
9 1.58 1.58 80.3 -2.23 -0.48 29.9 78 8 6 3 4 2 2 0  
10 1.58 1.58 123.1 -2.44 -0.60 30.6 83 12 16 5 4 3 1 0  
11 2.03 3.50 28.9 -2.66 -0.79 23.4 92 4 2 5 0 0 0 0  
12 1.99 2.16 30.8 -2.83 -0.52 29.8 82 6 3 4 0 2 0 0  
13 1.86 1.86 38.0 -2.82 -0.80 23.3 90 4 4 6 0 0 0 0  
14 1.99 2.12 39.0 -2.49 -0.53 24.3 82 6 3 7 1 3 0 0  
15 1.91 2.90 48.6 -1.67 -0.36 21.9 76 6 3 5 0 5 0 0  
16 1.81 2.30 63.8 -1.56 -0.38 21.1 74 8 3 4 2 6 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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